rs256105417 SNP Detail

Summary

• ID
  rs256105417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATACAAG GAAGTAAAAA TGAATATGGG
  TGTGCTTACC TGTGACAAAG ACTTCTGTGT CCAGAAGGGC AAATCCAAAG GCCAGAAGTT
  TGAGCCACAA ACCCATGGTC ATATCTGGAG ATCAGCTGTG CCCCTAAGAA ATAGGGTCTC
  Y
  CTGAAAGGCA AAATAATGGT TATCTCTCTT GAAGTTTGTC TCTGTAAAGC TAAGTCAAAA
  CTAAAAGAAA AGAACGCATA CTTTGCACTC TGTCTTATCA GATGGGGAGC AAGTTTCCTA
  CTCTCTTACC CTAAGAACAA ACCACTTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000112	CHEV_1_140071703	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256105417					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102864 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	101 bp upstream
Rr396336	regulatory region 396336	1062 bp upstream
Rr419676	regulatory region 419676	1992 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	131 bp proximal
Tssr233	transcription start site region 233	492 bp downstream
Tssr9153	transcription start site region 9153	668 bp downstream
Tssr9154	transcription start site region 9154	502 bp upstream
Tssr9155	transcription start site region 9155	565 bp upstream
Tssr14018	transcription start site region 14018	822 bp upstream
Tssr14019	transcription start site region 14019	787 bp upstream
Tssr14020	transcription start site region 14020	778 bp upstream
Tssr14021	transcription start site region 14021	55 bp downstream
Tssr14022	transcription start site region 14022	112 bp downstream
Tssr14023	transcription start site region 14023	157 bp downstream
Tssr14024	transcription start site region 14024	500 bp downstream
Tssr14025	transcription start site region 14025	527 bp downstream
Tssr14026	transcription start site region 14026	545 bp downstream
Tssr14027	transcription start site region 14027	566 bp downstream
Tssr14028	transcription start site region 14028	592 bp downstream
Tssr14029	transcription start site region 14029	616 bp downstream
Tssr14030	transcription start site region 14030	770 bp downstream
Tssr14031	transcription start site region 14031	787 bp downstream