rs256139438 SNP Detail

Summary

• ID
  rs256139438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACTGA TCCATAGAAC
  AATTTCCCCA GTGTCTAGCT TGGTGAACCA GTGAGTTCGT CAGGATTGGG GTTCCTAACA
  GAAGTATGGA TGAAGGGGTA CTCATAGGAG CAACTGCGTC ACTCCCACAC AGCACCACAG
  CTCCGTGGGT GCGAGCGATG ACTCATTAAA GCCGCAATCC TGGAGCTCTC TGCACTTTTG
  Y
  ATACATCCTG GCAATCCAAA TCTCTCCTTT GTTCTTCAGT CCTTAGAATC TCCAACCCCC
  CACCCCGCCC CCACCCCCGC CCCGCCCCCC GTTGTTTACA CTTTTTATAC CGCTGAGAAA
  GAGCCCTCAA GAATCTTCCA AATTTCTGCT CCTATAGAGA ACCTTTCACA TCTCCACCTC
  CACCCCCACG CCCTTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398252301	MGP_WTSI_17_43704812	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256139438					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252301	MGP_WTSI_17_43704812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	460 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	255 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	417 bp proximal
Tssr144685	transcription start site region 144685	124 bp upstream
Tssr144686	transcription start site region 144686	233 bp upstream
Tssr144687	transcription start site region 144687	289 bp upstream
Tssr144688	transcription start site region 144688	427 bp upstream
Tssr144689	transcription start site region 144689	584 bp upstream
Tssr144690	transcription start site region 144690	619 bp upstream
Tssr144691	transcription start site region 144691	639 bp upstream
Tssr144692	transcription start site region 144692	695 bp upstream
Tssr144693	transcription start site region 144693	743 bp upstream
Tssr144694	transcription start site region 144694	778 bp upstream
Tssr144695	transcription start site region 144695	826 bp upstream
Tssr144696	transcription start site region 144696	843 bp upstream
Tssr144697	transcription start site region 144697	1533 bp upstream
Tssr148130	transcription start site region 148130	641 bp downstream