rs256140401 SNP Detail

Summary

• ID
  rs256140401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTATTC ATTCCTGGTT
  ATTGTCATTT TTTTCTTTAG TGTCAATGAC CCTAGTAATA TGTCGCTGGT TAAAGAGACG
  GTGGACAGAC TGTTGAAAGG CTATGACATT CGTCTGAGAC CAGATTTTGG AGGTAATGGG
  ATTGCCTTGC AAATAAGAAA CAGCCCAGCT CCAGCCCAAG CTGTCTTTTG GGCTTTGTGT
  R
  CACTCTCTTT CCTCTCCTTA GTTGTGGGCG CATGTGATGT ATAGAATGTT TTCCTATTTT
  ACCTTGCTGA GAAACAGATC CAAACTTAAG CCAGTTTCTG TCCAGCACTT GAGAGGTCTT
  TCAAGAAGAC CCCCTTAGAG TGTGACCAGA CTTTGTAACC GCTCTCGTTC TCCTTCACCG
  TGATACATCT TTGTTCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383144000	MGP_WTSI_11_42235214	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256140401					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383144000	MGP_WTSI_11_42235214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1209 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	507 bp upstream
Rr445405	regulatory region 445405	1945 bp distal
Rr445406	regulatory region 445406	352 bp distal
Rr445407	regulatory region 445407	1616 bp proximal
Rr445408	regulatory region 445408	1742 bp proximal
Tssr100974	transcription start site region 100974	1993 bp downstream
Tssr100975	transcription start site region 100975	1927 bp downstream
Tssr100976	transcription start site region 100976	1757 bp downstream
Tssr100977	transcription start site region 100977	1269 bp downstream
Tssr100978	transcription start site region 100978	933 bp downstream
Tssr100979	transcription start site region 100979	857 bp downstream
Tssr100980	transcription start site region 100980	472 bp downstream
Tssr100981	transcription start site region 100981	428 bp downstream
Tssr100982	transcription start site region 100982	391 bp downstream
Tssr100983	transcription start site region 100983	379 bp downstream