rs256141759 SNP Detail

Summary

• ID
  rs256141759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCACAGG TACCCGCTTG TGCGCTTGTG
  TTTGCAGATA CGGGGTGGCA AACCAAAAAG GATGAAGACT CCTAGGCACC CTGTTTGTTC
  TTCACCGGGG TTAGACAGAA GTCTGGGCTA ATGTGGAATT AATAGTTCTG TGTTACTAAA
  Y
  TTCCACGCCT GCGCCACCGA AGGAGCCCTG CCAGATAGAA CTAGAACCCC ATCCCCCACT
  CCAGGGACAA GCAGAAACAT CCGCCGCCCG AGCAAGTCTC TGCGCGTCTT GGCAGCCTCC
  CTCCCCAGCC CTGCTCACCA GCTGTCCCTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322906503	CHEV_9_37062745	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256141759					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	12 bp proximal
Gm10177	predicted gene 10177	1979 bp downstream
Gm48081	predicted gene, 48081	338 bp upstream
Gm65989	predicted gene, 65989	1795 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	244 bp proximal
Rr676658	regulatory region 676658	349 bp proximal
Rr676659	regulatory region 676659	568 bp proximal
Rr676660	regulatory region 676660	876 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	197 bp downstream
Tssr88822	transcription start site region 88822	221 bp downstream
Tssr88823	transcription start site region 88823	243 bp downstream
Tssr88824	transcription start site region 88824	269 bp downstream
Tssr88825	transcription start site region 88825	284 bp downstream
Tssr88826	transcription start site region 88826	370 bp downstream
Tssr88827	transcription start site region 88827	463 bp downstream
Tssr88828	transcription start site region 88828	486 bp downstream
Tssr88829	transcription start site region 88829	509 bp downstream
Tssr88830	transcription start site region 88830	525 bp downstream
Tssr88831	transcription start site region 88831	570 bp downstream