rs256142309 SNP Detail

Summary

• ID
  rs256142309
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:77778394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccaggcgtg ggcatctgag aagcccacct
  cagtgacaca cttccttcca ctgcaccaag tctacctcaa caaagccaca cctcctaatt
  cctgtgagtc tatgtgggcc atttttattc aaacccccac aGGGTGTAAA CAAAATAAAA
  M
  TCCTGGGCTA GGCActttaa tcccataatt taagaggcag acctgtgttc aagtgttcaa
  ggccagcctg atctatatag tcagttctca gccagccaag gctacgtagt gagcttttaa
  tactagtact tgggaagcag aggcagatag                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358330	CHEV_2_77786107	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256142309					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77778394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11838	CpG island 11838	1575 bp distal
Cwc22	CWC22 spliceosome-associated protein	1675 bp upstream
Gm74688	predicted gene, 74688	within coordinates
Rr397064	regulatory region 397064	1466 bp downstream
Rr559852	regulatory region 559852	1926 bp distal
Rr559853	regulatory region 559853	1185 bp distal
Tssr24874	transcription start site region 24874	1851 bp upstream
Tssr24875	transcription start site region 24875	1723 bp upstream
Tssr24876	transcription start site region 24876	1677 bp upstream
Tssr24877	transcription start site region 24877	1658 bp upstream