rs256144544 SNP Detail

Summary

• ID
  rs256144544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTGTCT GAAGACAGCT
  ACAATGTACA TAATATAAAT AAATCTTTTT TTAAAAAATA CTGTATGTGC ACATATAAGA
  GAGAAAACAT TTGTTAAATT TGGGAGTCCC CAAATCCCAA GTGAGTAAAA ATTTCTCTTT
  TTTTTTTTTT CAGTATTGAA AATTGCTAGG CAAAGGACTT TACCACCAAG CTATATTCCC
  W
  GACCCTTATT ACTTAAGTGA GGGTAGGGTG GGTTCTATGT AGCCCAGGCT GGCCTTGAAT
  TTGAGTTCCT CCTGCTTCAG TCTCCCCAGA GAGAGTTCTG GGATAATAGG TGTGTCCCAC
  CTCACCCAAT TTAAAAGTAT TATAACCAAT CTGGCTTAGA TGAAGAAATT CTTAAGAGAC
  ACTTGTGTCT CAATCTGTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783675	CHEV_11_88859206	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256144544					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888718 () rs orientation: forward

Symbol	Name	Function Class
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1373 bp upstream
Rr454272	regulatory region 454272	1309 bp distal
Rr454273	regulatory region 454273	966 bp distal
Rr454274	regulatory region 454274	390 bp distal
Rr454275	regulatory region 454275	648 bp proximal
Rr454276	regulatory region 454276	1420 bp proximal
Trim25	tripartite motif-containing 25	1484 bp upstream
Tssr104062	transcription start site region 104062	1493 bp upstream
Tssr104063	transcription start site region 104063	1550 bp upstream
Tssr110061	transcription start site region 110061	1359 bp upstream