rs256149589 SNP Detail

Summary

• ID
  rs256149589
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191450375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGAGC GAGCGAGTCT
  CCACGCCGCC CGGGACCTGG AGCCGGGAGG GCCGCGCCGC CGCTGCCGCC GCCGCCGCCT
  CCTTCCGCCG GCCATGCATT CTTCCGGCTC CCGCAGCCCG GGCTGGGTCC CGGCCTGCCC
  AAGGTAAACC TGGGGCGCGG CGGGCCGGGC CCGGGAGGCG CTGGGGGCGG GGAAGGGTGC
  S
  GTTGGTCGCG TGGCCTGTGG AGGAGGCGGC GGCGGCCCGA GGGCCGAGGG CGCGGTAGGC
  CCGGGGAGGA GGCGGAGGCG GGGGCGCGGG GCATCGCCCG CCTCCCCGGG ACCCGCCCCG
  GTGACAGGTC CGGCCTCTGA GTCCCCACCG CGCCTCTGTC CGCAGGCAGC CGCGAGGGGA
  CTAGGGCGCC CGCGCGCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352839504	MGP_WTSI_1_193542142	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256149589					SNP	C	C	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352839504	MGP_WTSI_1_193542142	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191450375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	within coordinates
Lpgat1	lysophosphatidylglycerol acyltransferase 1	Intron
Rr426207	regulatory region 426207	419 bp distal
Rr426208	regulatory region 426208	within coordinates
Rr426209	regulatory region 426209	263 bp distal
Rr426210	regulatory region 426210	521 bp proximal
Tssr10776	transcription start site region 10776	359 bp downstream
Tssr10777	transcription start site region 10777	233 bp downstream
Tssr10778	transcription start site region 10778	202 bp downstream
Tssr10779	transcription start site region 10779	173 bp downstream
Tssr10780	transcription start site region 10780	within coordinates
Tssr10781	transcription start site region 10781	115 bp upstream
Tssr10782	transcription start site region 10782	132 bp upstream
Tssr10783	transcription start site region 10783	901 bp upstream