rs256170738 SNP Detail

Summary

• ID
  rs256170738
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  GTAAAAACCA TCAAAAAGTA GTCATTCCCC TTACTTCTAA ATGGACAGGA TGTATATACA
  CACACCAAGT ATATATTACC AAATCCTAAG ATGTACCAAC TGCAGACTTG ACTTTTAACA
  CAAGAAGGCC ATGCAACCGA ATAGATGGCA CCAACACCAG ACAGATCAGA CTCCTTTAAG
  M
  CTGTTGTGAG GTCAGATAGC AAGTCCATTT CCAGTAAGCT AGAACTCTGA TCTTCCAAGT
  TAGGGTCCTG GGAAATGCCC AAGAGTCCAA GGTTCGACAA TCTCTTACAC AGTACTTATA
  CTTAGAATTT TATCACCTAT GTAATTTAGA TAAGAAATTG TACAGCCATC TGTCTATTTG
  AAGTAAGCAA AAAAGGAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513543	CHEV_10_121022564	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256170738					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	739 bp proximal
Rr402304	regulatory region 402304	364 bp upstream
Rr402305	regulatory region 402305	1218 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1269 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	709 bp upstream
Tssr96044	transcription start site region 96044	745 bp upstream
Tssr99623	transcription start site region 99623	365 bp downstream
Tssr99624	transcription start site region 99624	393 bp downstream
Tssr99625	transcription start site region 99625	414 bp downstream
Tssr99626	transcription start site region 99626	1202 bp downstream
Tssr99627	transcription start site region 99627	1222 bp downstream
Tssr99628	transcription start site region 99628	1305 bp downstream
Tssr99629	transcription start site region 99629	1333 bp downstream
Tssr99630	transcription start site region 99630	1361 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1872 bp downstream