rs256173403 SNP Detail

Summary

• ID
  rs256173403
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110363154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTCACC TTGTTGCCTA
  GGCTGCTCTT GAATTTACTG TGGCTGGCCT CGAACCTGGG ATCCTTCCTC TTCAGCTTCT
  TCAGTGCTGG GATTGCAGGT GCTGACAACT AAGAAAAACC ATTGTTTTAC CTCAATTTGC
  TTGTATTGAT GTCTGCACAT AGCAACAAAA TTCATTCCCA AGTTAAGGTT TGAAGGGATG
  K
  CTAGTGAAAA ACAAAACTTT TCACTAAATT ACCACATTAC ACATTTTTGG GGGAACCTTT
  GCCAAAGTTT TTCACCTTGG CTCAGAAACA TTTGGATCTT ACTTAATAGT TCTTTAGTGT
  TGTAACACAA AAGTTATTTT GTTGGAGTGT TATCTCCACA CACAAAGCAA AATCCTCATG
  TTGCCTTAAA ATAAAATTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905132	MGP_WTSI_9_110436590	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256173403					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905132	MGP_WTSI_9_110436590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110363154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	636 bp distal
Gm69936	predicted gene, 69936	1729 bp upstream
Rr687130	regulatory region 687130	1740 bp distal
Rr687131	regulatory region 687131	1719 bp distal
Rr687132	regulatory region 687132	1479 bp distal
Rr687133	regulatory region 687133	64 bp distal
Rr687134	regulatory region 687134	1217 bp distal
Rr687135	regulatory region 687135	988 bp distal
Rr687136	regulatory region 687136	1085 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	1358 bp downstream
Tssr87391	transcription start site region 87391	1619 bp downstream
Tssr87392	transcription start site region 87392	1486 bp downstream
Tssr87393	transcription start site region 87393	1446 bp downstream
Tssr87394	transcription start site region 87394	1394 bp downstream
Tssr91630	transcription start site region 91630	1724 bp upstream
Tssr91631	transcription start site region 91631	1308 bp upstream
Tssr91632	transcription start site region 91632	1285 bp upstream
Tssr91633	transcription start site region 91633	1260 bp upstream
Tssr91634	transcription start site region 91634	1240 bp upstream
Tssr91635	transcription start site region 91635	1147 bp upstream
Tssr91636	transcription start site region 91636	1128 bp upstream