rs256180103 SNP Detail

Summary

• ID
  rs256180103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25114261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTGTT CAGGACACCG
  GCCGCTTCCG GAACGGGAGA GCTCCTGAAG CGCAGATTTC CTGTGGAGTA AGGACACTGA
  CATGGCGCGG AAGAAAGTAA GACCCCGGCT GATCGCTGAG CTGGCTCGCC GCGTGCGCGC
  CTTGCGCGAG CAGCGGAACC AGCCGCGAGA TTCGCAGCTC TACGCCCTAG ACTACGAGAC
  R
  CTGACCCGGC CGCACTCCGG TCGCCGGCTG CCGGTACGCG CCTGGGCCGA CGTGCGTCGC
  GAGAGCCGCC TCCTACAGCT GCTCGCCCGC CTCCCCTTGT TCGGCCTGGG CCGTCTGGTT
  ACCCGCAAGT CCTGGCTGTG GCAGCACGAC GAGCCATGCT ACTGGCGCCT CACGCGTGTG
  AGGCCCGACT ACACGGCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397865729	MGP_WTSI_17_25032232	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256180103					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397865729	MGP_WTSI_17_25032232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25114261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	200 bp upstream
Mrps34	mitochondrial ribosomal protein S34	within coordinates
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1213 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	120 bp downstream
Tssr143114	transcription start site region 143114	232 bp upstream
Tssr143115	transcription start site region 143115	1201 bp upstream
Tssr143116	transcription start site region 143116	1248 bp upstream
Tssr143117	transcription start site region 143117	1322 bp upstream
Tssr146794	transcription start site region 146794	210 bp upstream
Tssr146795	transcription start site region 146795	173 bp downstream