rs256189758 SNP Detail

Summary

• ID
  rs256189758
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60194965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGACAG TAAGGACTCT
  CACTGCAGAT CCCCATCCCC CTCTCTGCTG CCTCATTTCC CTGTCTTTTC TTGACTGTGG
  CCTCAGAAGC CCCTCTACCT GTCACTGATC ACTCTGTGAA GCAGGCATCG CCAGCCAATC
  TGCAGAGGGG ACACACATTC ACTTCCTAAT GGCACAGCAG GGACTAGACT GTAGGTTTTC
  C
  GGCAGAGCAG AGGGTGGCTG TCAGCCCTGG TGCTGGCCCA GAGAGAAACC TTATGGGTGA
  GTTACAGGGC TTGGCTCTCA AGGAAGCTGA GGACATAGAG GTTCATTTGA GAATGCCCTA
  TGGCATATAT ATATAGTAGA CAAGGGGATA TATTTCACAG TGCCCAACAT TTCTATGAAA
  AGAGGGCTGT GTCGCATAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325148	CHEV_10_59821934	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256189758					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60194965 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	1637 bp proximal
Tssr93621	transcription start site region 93621	1149 bp downstream
Tssr93622	transcription start site region 93622	1065 bp downstream
Tssr93623	transcription start site region 93623	701 bp downstream
Tssr97721	transcription start site region 97721	1086 bp upstream
Tssr97722	transcription start site region 97722	952 bp upstream
Tssr97723	transcription start site region 97723	920 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates