rs256201204 SNP Detail

Summary

• ID
  rs256201204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72021223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGTG CGAAGAAAGA
  GGAAGGGAGT AGAGGGCACA AGCTGGGGAG AGGAGGAAGT GGGGCAAAGG GCACAGGAGA
  TGTTCCAGGA ACATCGAAAC AGGAGGAGGC AGTGAGCAAG TAGGAGGGCA GGCAGCAGGG
  CTGAATCCCA GCTGGGGGGG ACGGCTGCAG CATTCAGTGT CTTTACCTGT AAAACTGGGG
  K
  AGAGGGGGAG AGGGCTGGTC TAGAGGGTTC TTGTTGACCC CTGGCTGGCT GGGCCGAGAT
  CTTCATCACC ACCACCACCC CCATCCCACC CACCTCTCTG AGACCAATGG CAGCTGCGGG
  TGGGGGTGGG GCCGCACTTG CCCAGCCTTG GCCTTCGAGT GGCGCTGGAA GCAGGCCCTG
  GCTGGCTTCT TCCCAAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375117429	MGP_WTSI_8_74092478	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256201204					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375117429	MGP_WTSI_8_74092478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72021223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	780 bp proximal
Cpgi20549	CpG island 20549	1682 bp proximal
Nxnl1	nucleoredoxin-like 1	1978 bp upstream
Rr400934	regulatory region 400934	1684 bp upstream
Rr665115	regulatory region 665115	within coordinates
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	303 bp upstream
Tssr77870	transcription start site region 77870	287 bp upstream
Tssr77871	transcription start site region 77871	378 bp upstream
Tssr77872	transcription start site region 77872	1078 bp upstream
Tssr81733	transcription start site region 81733	1967 bp upstream
Tssr81734	transcription start site region 81734	1953 bp upstream
Tssr81735	transcription start site region 81735	1947 bp upstream
Tssr81736	transcription start site region 81736	1939 bp upstream
Tssr81737	transcription start site region 81737	1927 bp upstream
Tssr81738	transcription start site region 81738	884 bp downstream