rs256201621 SNP Detail

Summary

• ID
  rs256201621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130551233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTCACTC TATTCCACTT GGTCCCCACC
  ATGACACCTA TACCAGCCAC ACTGATGCTG ATCCCAGCTG ACGTCAGTCA CAAGCCCACA
  CAGTTAATGC AGGCTCTCCC TCCCCCACTG TGGCTCATAG AGAAGTTTGG GGCTAGCCTC
  Y
  ACCAGCCAAG TTTGAAGCAA GAAGGGAGCT AGGGCCTCCC AGGACCAAGG CGCTGTGTGG
  GTTGTCCCTG GTCTCCATGT ATCTCCTTTC TGCTCTGAGC CAGGAGCTGT CTCTGCCTCC
  CAGGACACGT GTCTCCAAAG TGCCTGTGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318869	CHEV_4_130379837	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256201621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130551233 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	472 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	1721 bp downstream
Tssr39280	transcription start site region 39280	1254 bp downstream
Tssr39281	transcription start site region 39281	1196 bp downstream
Tssr39282	transcription start site region 39282	875 bp downstream
Tssr39283	transcription start site region 39283	795 bp downstream
Tssr39284	transcription start site region 39284	587 bp downstream
Tssr39285	transcription start site region 39285	523 bp downstream
Tssr39286	transcription start site region 39286	456 bp downstream
Tssr39287	transcription start site region 39287	442 bp downstream
Tssr39288	transcription start site region 39288	398 bp downstream
Tssr39289	transcription start site region 39289	277 bp downstream
Tssr39290	transcription start site region 39290	270 bp downstream
Tssr39291	transcription start site region 39291	124 bp downstream
Tssr39292	transcription start site region 39292	41 bp downstream
Tssr39293	transcription start site region 39293	1944 bp upstream