rs256202765 SNP Detail

Summary

• ID
  rs256202765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCCCCG CCCCGCCCCA
  AACCCACGAC TAACTCCCTC CTACCCTTCT CTGAAGTAGG AGCAGCACAA CAAAGCCTTG
  TGTTCTTGGA ATTGTATCCT CTTACAGCTG GGAATAGAAA GGAGTGGGAG AGCAGACTGC
  TTGTTGGAAA TGTGTGTATA TATTCGGGTC CAGTGAGGGT CAGAGAGAGA GAGAGAAGAA
  R
  AAAAAAGAAG AGAAAGGAAA AGAAAAGAAA AAAAAAAAAC CGAAAGAAAC AAAAGGCCCT
  CTAGTGGAAA CAGAAGTAAG TAGTCTTCAA GTATTTGGAG ACAAAGCTGT TGAAGCAACT
  CTCTAGAGTA GTGGGGTTTG CTGCTGCTGT TGTTATTTAA ACTTTAGATT CAGATCGGGA
  GTCGGAGAGT GACCTGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210065	MGP_WTSI_10_128182176	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256202765					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210065	MGP_WTSI_10_128182176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	897 bp distal
Dgka	diacylglycerol kinase, alpha	265 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	849 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1565 bp downstream
Rr402364	regulatory region 402364	171 bp downstream
Tssr96440	transcription start site region 96440	298 bp downstream
Tssr96441	transcription start site region 96441	97 bp downstream
Tssr96442	transcription start site region 96442	73 bp upstream
Tssr96443	transcription start site region 96443	1337 bp upstream
Tssr99941	transcription start site region 99941	1275 bp upstream
Tssr99942	transcription start site region 99942	1210 bp upstream
Tssr99943	transcription start site region 99943	1148 bp upstream
Tssr99944	transcription start site region 99944	1125 bp upstream
Tssr99945	transcription start site region 99945	1035 bp upstream
Tssr99946	transcription start site region 99946	1011 bp upstream
Tssr99947	transcription start site region 99947	868 bp upstream
Tssr99948	transcription start site region 99948	838 bp upstream
Tssr99949	transcription start site region 99949	233 bp upstream
Tssr99950	transcription start site region 99950	62 bp upstream
Tssr99951	transcription start site region 99951	39 bp upstream
Tssr99952	transcription start site region 99952	35 bp upstream
Tssr99953	transcription start site region 99953	within coordinates
Tssr99954	transcription start site region 99954	325 bp downstream
Tssr99955	transcription start site region 99955	358 bp downstream
Tssr99956	transcription start site region 99956	1113 bp downstream
Tssr99957	transcription start site region 99957	1180 bp downstream