rs256220482 SNP Detail

Summary

• ID
  rs256220482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63238917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACGTTT CATAAAATGT
  AACATCTGTG AGAATGTGTT ATAAACATGA CAGTGCCCAA AACAGCTGCG GATCCCCACT
  TAGAGCTAGT TCTCCACAGT TTGGTTTGGA ACACACACTT GCGAATGTAA TTCACGTATC
  TCCCCCCCCC CCACACACAC ACACCTCTCC TCTCCCTCCC TTCTCTGTCC CCCTTCCTCC
  Y
  TCCCCCCTCC TTCTCTCCCT CACTCCCTCC TGTTTCACCC ACCCCCAGCC CCATCGGTGA
  TATATCTCAG TAGGTTGTGG TTTTTTTTTA GCATCGGACC TTAGTTTCAG CGCTTCACTT
  CATCCCCTGT TTTAAAGCCA GTCTTGGTTT GAAATGGAGC GGGCTAGACC AGGCTAGCCT
  AGAATTCCCC GAATTCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349861022	MGP_WTSI_1_63246332	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256220482					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349861022	MGP_WTSI_1_63246332	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63238917 () rs orientation: forward

Symbol	Name	Function Class
Cmklr2	chemerin chemokine-like receptor 2	within coordinates
Cpgi314	CpG island 314	425 bp proximal
Gm56066	predicted gene, 56066	1602 bp downstream
Platr12	pluripotency associated transcript 12	470 bp upstream
Rr188	regulatory region 188	within coordinates
Rr371405	regulatory region 371405	218 bp upstream
Tssr7060	transcription start site region 7060	809 bp upstream
Tssr7061	transcription start site region 7061	823 bp upstream
Tssr7062	transcription start site region 7062	835 bp upstream
Zdbf2linc	Zdbf2 associated long non-coding RNA	600 bp upstream