rs256230154 SNP Detail

Summary

• ID
  rs256230154
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67063353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGGGTC TGGGTTCTGA
  ACTCTGGTTG ACAGGCACTT TGTCCCACTA TGGTCTCCGT AGCACCTCAA GAAGGGTCTT
  CATTAATCCC AGCACTTGGG AGGCAGAGGC AGGTGAATTT CTGAGTTCGA GGCCAGCCTG
  GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTATCCAGA GAAACCCTGT CTCGAAAAAA
  A
  AGTCTTCAGT GCTCTCCAGG AAACATCTCC ACATCACTTG TCTCATTACT TTTCTGTTAA
  ACCCCTCCCC TCCACAGTAG GAAGTTGCAT GTTAATTTGC TGGTTTTTAG CCAGATTAAA
  GGACTATCTA AAGATTATAT ATGGTTTAAT GACCCTAAAG GAACGTAACT ATGTTTAGAA
  CCACCCTCCC AACCTTGTCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss377898714	MGP_WTSI_9_67003878	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs256230154					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377898714	MGP_WTSI_9_67003878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67063353 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	411 bp distal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	404 bp distal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	579 bp distal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	314 bp downstream
Gm68695	predicted gene, 68695	808 bp upstream
Rr681888	regulatory region 681888	1946 bp distal
Rr681889	regulatory region 681889	542 bp proximal
Rr681890	regulatory region 681890	983 bp proximal
Tssr90326	transcription start site region 90326	840 bp upstream
Tssr90327	transcription start site region 90327	807 bp upstream