rs256239947 SNP Detail

Summary

• ID
  rs256239947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATTCTCC TGGAGACTGA
  ACTTGGATAC GTTAGCTCAG CACTTGGACA AGATAATGAC CTTTCCTCAG CAACGTGAAC
  CCTACTCGGG GCCAACTCTC TTCCTGCTTG GTGGAAATTC TACATATGTA CAGTAAGCCG
  GTGTGGGACC ATAGGAAGGG GCATGCTTTG CCCACCACCA GCTATGGGAG CCTGCGTGGG
  Y
  TAGGGGAGGC GGGGTATCTG GGAGCCTGGC AATACCACTG CGCATGAAGG CTCATGCACA
  TCTCTCTCTC CTGTTCTCTC TCTCTCCCTT TCTCCCTCTC CCCACACCTC TCCATTGTCT
  TCCCTCTCCA TTGGCTTCAC TATGGCGGCC AGACCCAGCC ACCACTCAGA GATTAGGCGA
  CTCTTCCCTC AAGCCCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824593	MGP_WTSI_5_135487604	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256239947					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824593	MGP_WTSI_5_135487604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040588 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	452 bp downstream
Cpgi16736	CpG island 16736	1560 bp distal
Gm43372	predicted gene 43372	1626 bp upstream
Gm73578	predicted gene, 73578	253 bp downstream
Rr110217	regulatory region 110217	1013 bp proximal
Rr110218	regulatory region 110218	1413 bp proximal
Rr124503	regulatory region 124503	587 bp distal
Rr124504	regulatory region 124504	12 bp proximal
Tssr1661	transcription start site region 1661	1702 bp downstream
Tssr1662	transcription start site region 1662	993 bp downstream
Tssr1663	transcription start site region 1663	1425 bp downstream
Tssr1664	transcription start site region 1664	1443 bp downstream
Tssr49124	transcription start site region 49124	1969 bp downstream
Tssr49125	transcription start site region 49125	1958 bp downstream
Tssr49126	transcription start site region 49126	1889 bp downstream
Tssr49127	transcription start site region 49127	1833 bp downstream
Tssr49128	transcription start site region 49128	1720 bp downstream
Tssr53717	transcription start site region 53717	1012 bp downstream
Tssr53718	transcription start site region 53718	1028 bp downstream
Tssr53719	transcription start site region 53719	1078 bp downstream
Tssr53720	transcription start site region 53720	1123 bp downstream
Tssr53721	transcription start site region 53721	1380 bp downstream
Tssr53722	transcription start site region 53722	1397 bp downstream