rs256250261 SNP Detail

Summary

• ID
  rs256250261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36916768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAATGGGG GGCGGGGGAG
  AAAGGTAGAT ATTTAGGAAC ATACATTTTA ATTCCACTAT GAAAATTTTG GTCATCTTCA
  GGCTGAGGTT CATCAAATGC ATCTCTCCTG AAATTACTGT TTCATTATTT CTATTCTCAT
  CTACTAGGAA AACAGAGTCC CCAAACATCC TCCAGGTGAA GTCCCTATCT TAAAACATTA
  R
  CTGTTTCTTA ATCTATGAAC ATTAGTCGTC TAACTGCAAA ATGCCACACT CACTTATTTC
  TAACACTTAC AGCATTTGCT GCCCTTGGGA TCTATGTCCT AGGATGGTTG CAGCTCTTTG
  AACTAATGTC AAAGGCACAA AACCACCAGA TGCAAAGCAT TAAGTCATCT CCTAAAATTA
  AAGGAAAAGG CAACATCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388276783	MGP_WTSI_13_36824663	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256250261					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276783	MGP_WTSI_13_36824663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36916768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	451 bp distal
Gm30177	predicted gene, 30177	1492 bp downstream
Nrn1	neuritin 1	Intron
Rr477392	regulatory region 477392	1059 bp distal
Rr477393	regulatory region 477393	558 bp distal
Rr477394	regulatory region 477394	443 bp proximal
Rr477395	regulatory region 477395	1673 bp proximal
Tssr122097	transcription start site region 122097	1472 bp downstream
Tssr122098	transcription start site region 122098	1499 bp downstream
Tssr122099	transcription start site region 122099	1577 bp downstream
Tssr122100	transcription start site region 122100	1610 bp downstream
Tssr122101	transcription start site region 122101	1632 bp downstream
Tssr122102	transcription start site region 122102	1656 bp downstream