rs256257729 SNP Detail

Summary

• ID
  rs256257729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80203015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTGCGA CCTGGCAGCC
  AGGTGCCAGC GGTTCCCGCG TCCACCGCCA CCGCGGGGCC CAGCGCGTCC CGCTCGTCCC
  TCCCTTCCCG GCCCGCGTCA GGCACCCAGG GCAGTGAGTG CCCGCCGGGT GACCGATCCC
  GTACCGCCCG CCGACCTCCG CGCGTCCCGG CCCCGTGGCC CCGGCTCAAG GCCGCCCCCT
  Y
  GGGTCGGGGC GGACACCGCG GCGGCCACGC GGCGGCGGCG GGCAGGGGGC CGGGCTGCCC
  GTTCCCCCGG CAGCTGGGAG AGCCGAGGCC CGCGGGCCGC CCTCTCAGGC CGCGCGGCGG
  AGCGTGGGGC GCGGCTGCCG CTAGGCCCTG CGAGCGAGCG AACGAGCGTG CGAGCGAACG
  GGCGGCCGCG GCGGCCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399169379	MGP_WTSI_17_80294926	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256257729					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399169379	MGP_WTSI_17_80294926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80203015 () rs orientation: forward

Symbol	Name	Function Class
Atl2	atlastin GTPase 2	within coordinates
Cpgi9524	CpG island 9524	within coordinates
Gm41625	predicted gene, 41625	1852 bp downstream
Rr340218	regulatory region 340218	within coordinates
Rr405462	regulatory region 405462	362 bp upstream
Tssr149462	transcription start site region 149462	371 bp downstream
Tssr149463	transcription start site region 149463	409 bp downstream
Tssr149464	transcription start site region 149464	442 bp downstream