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rs256260416 SNP Detail
Summary
  • ID
    rs256260416
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848683 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTGGAGCAC ATTTAAATTT
TAGCAATATG AACATCTAAT TTTCAGCACA TAATGATCCC TTTCATGGGG TCTTCAAGAT
AAAGATTCCT TAATCTTGTA AGCAATGTAA TTAAAGTAGG CATTAATCAT GTAGGCTTTT
GTGTTGAAGT TTACGATGCA AAAGCCTATT AGCTATCCCA TCATGAAAGC CCATCGGTGC
R
AGGCTTAGGA ATTTTTAAGA GGCTGGATGG GAAAACTACT CAAAATTCTG AACTGCCTAA
GAGGGGCCAG CTGCAAACAT TCAACAGCTC TACAGGTCTT TTTGGAAAAA GAGAAAAAAG
GCACTTATCT ATCCCTAACA TGCAATACTG CAGATCCAAG TTACACTTAT CTGTCAACAG
CAGTCTGCTG TTTCCTGCTC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662583 MGP_WTSI_19_5798655 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256260416 SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662583 MGP_WTSI_19_5798655 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848683 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 345 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 290 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 763 bp proximal
Tssr5415 transcription start site region 5415 1789 bp upstream
Tssr5416 transcription start site region 5416 1340 bp upstream
Tssr5417 transcription start site region 5417 371 bp downstream
Tssr5418 transcription start site region 5418 854 bp downstream
Tssr5419 transcription start site region 5419 1508 bp downstream
Tssr5420 transcription start site region 5420 1525 bp downstream
Tssr157648 transcription start site region 157648 1918 bp upstream
Tssr157649 transcription start site region 157649 1826 bp upstream
Tssr157650 transcription start site region 157650 1761 bp upstream
Tssr157651 transcription start site region 157651 1691 bp upstream
Tssr157652 transcription start site region 157652 1551 bp upstream
Tssr157653 transcription start site region 157653 1467 bp upstream
Tssr157654 transcription start site region 157654 1413 bp upstream
Tssr157655 transcription start site region 157655 1387 bp upstream
Tssr157656 transcription start site region 157656 1354 bp upstream
Tssr157657 transcription start site region 157657 1234 bp upstream
Tssr157658 transcription start site region 157658 1128 bp upstream
Tssr157659 transcription start site region 157659 1024 bp upstream
Tssr157660 transcription start site region 157660 928 bp upstream
Tssr157661 transcription start site region 157661 895 bp upstream
Tssr157662 transcription start site region 157662 802 bp upstream
Tssr157663 transcription start site region 157663 741 bp upstream
Tssr157664 transcription start site region 157664 627 bp upstream
Tssr157665 transcription start site region 157665 618 bp upstream
Tssr157666 transcription start site region 157666 586 bp upstream
Tssr157667 transcription start site region 157667 332 bp upstream
Tssr157668 transcription start site region 157668 291 bp upstream
Tssr157669 transcription start site region 157669 272 bp upstream
Tssr157670 transcription start site region 157670 256 bp upstream
Tssr157671 transcription start site region 157671 235 bp upstream
Tssr157672 transcription start site region 157672 185 bp upstream
Tssr157673 transcription start site region 157673 151 bp upstream
Tssr157674 transcription start site region 157674 139 bp upstream
Tssr157675 transcription start site region 157675 126 bp upstream
Tssr157676 transcription start site region 157676 111 bp upstream
Tssr157677 transcription start site region 157677 89 bp upstream
Tssr157678 transcription start site region 157678 75 bp upstream
Tssr157679 transcription start site region 157679 7 bp upstream
Tssr157680 transcription start site region 157680 6 bp downstream
Tssr157681 transcription start site region 157681 35 bp downstream
Tssr157682 transcription start site region 157682 53 bp downstream
Tssr157683 transcription start site region 157683 79 bp downstream
Tssr157684 transcription start site region 157684 95 bp downstream
Tssr157685 transcription start site region 157685 105 bp downstream
Tssr157686 transcription start site region 157686 120 bp downstream
Tssr157687 transcription start site region 157687 189 bp downstream
Tssr157688 transcription start site region 157688 239 bp downstream
Tssr157689 transcription start site region 157689 270 bp downstream
Tssr157690 transcription start site region 157690 348 bp downstream
Tssr157691 transcription start site region 157691 394 bp downstream
Tssr157692 transcription start site region 157692 448 bp downstream
Tssr157693 transcription start site region 157693 505 bp downstream
Tssr157694 transcription start site region 157694 563 bp downstream
Tssr157695 transcription start site region 157695 627 bp downstream
Tssr157696 transcription start site region 157696 648 bp downstream
Tssr157697 transcription start site region 157697 697 bp downstream
Tssr157698 transcription start site region 157698 713 bp downstream
Tssr157699 transcription start site region 157699 771 bp downstream
Tssr157700 transcription start site region 157700 820 bp downstream
Tssr157701 transcription start site region 157701 838 bp downstream
Tssr157702 transcription start site region 157702 874 bp downstream
Tssr157703 transcription start site region 157703 925 bp downstream
Tssr157704 transcription start site region 157704 951 bp downstream
Tssr157705 transcription start site region 157705 972 bp downstream
Tssr157706 transcription start site region 157706 1020 bp downstream
Tssr157707 transcription start site region 157707 1066 bp downstream
Tssr157708 transcription start site region 157708 1076 bp downstream
Tssr157709 transcription start site region 157709 1088 bp downstream
Tssr157710 transcription start site region 157710 1107 bp downstream
Tssr157711 transcription start site region 157711 1126 bp downstream
Tssr157712 transcription start site region 157712 1163 bp downstream
Tssr157713 transcription start site region 157713 1190 bp downstream
Tssr157714 transcription start site region 157714 1241 bp downstream
Tssr157715 transcription start site region 157715 1258 bp downstream
Tssr157716 transcription start site region 157716 1302 bp downstream
Tssr157717 transcription start site region 157717 1329 bp downstream
Tssr157718 transcription start site region 157718 1374 bp downstream
Tssr157719 transcription start site region 157719 1428 bp downstream
Tssr157720 transcription start site region 157720 1447 bp downstream
Tssr157721 transcription start site region 157721 1483 bp downstream
Tssr157722 transcription start site region 157722 1500 bp downstream
Tssr157723 transcription start site region 157723 1575 bp downstream
Tssr157724 transcription start site region 157724 1584 bp downstream
Tssr157725 transcription start site region 157725 1630 bp downstream
Tssr157726 transcription start site region 157726 1635 bp downstream
Tssr157727 transcription start site region 157727 1650 bp downstream
Tssr157728 transcription start site region 157728 1747 bp downstream
Tssr157729 transcription start site region 157729 1946 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory