rs256264735 SNP Detail

Summary

• ID
  rs256264735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCCTG TGGCTGAGGA
  ATTTCGCGAC CGCATGCGCA CACACGTAGA CTCTCTGCGC ACACAGCTAG CGCCCCACAG
  CGAACAGATG CGCGAGAGCC TGGCCCAGCG CCTGGCTGAG CTCAAGAGCA ACCCTACCTT
  GAACGAGTAC CACACCAGGG CCAAAACCCA CCTGAAGACA CTTGGCGAGA AAGCCAGACC
  Y
  GCGCTGGAGG ACCTGCGCCA TAGTCTGATG CCCATGCTGG AGACGCTTAA GACCCAAGTC
  CAGAGTGTGA TCGACAAGGC CAGCGAGACT CTGACTGCCC AGTGAGGTGC CCGCTTCCAC
  TCCCCACCCC CGCATTGGCT TTCTTACAAT AAACCTTTCC AAAATGGAAT AGCTTCTTTC
  TTTGGGGGAC ATAGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451221	MGP_WTSI_9_46038380	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256264735					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451221	MGP_WTSI_9_46038380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141595 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	within coordinates
Gm67994	predicted gene, 67994	2000 bp downstream
Rr195182	regulatory region 195182	1395 bp distal
Rr195183	regulatory region 195183	595 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1923 bp downstream
Tssr84840	transcription start site region 84840	1583 bp downstream
Tssr84841	transcription start site region 84841	1453 bp downstream
Tssr84842	transcription start site region 84842	1351 bp downstream
Tssr84843	transcription start site region 84843	1317 bp downstream
Tssr84844	transcription start site region 84844	1143 bp downstream
Tssr84845	transcription start site region 84845	1106 bp downstream
Tssr84846	transcription start site region 84846	1051 bp downstream
Tssr84847	transcription start site region 84847	389 bp downstream
Tssr84848	transcription start site region 84848	311 bp downstream
Tssr84849	transcription start site region 84849	275 bp downstream
Tssr84850	transcription start site region 84850	233 bp downstream
Tssr84851	transcription start site region 84851	198 bp downstream
Tssr84852	transcription start site region 84852	101 bp downstream
Tssr84853	transcription start site region 84853	67 bp downstream
Tssr84854	transcription start site region 84854	54 bp downstream
Tssr84855	transcription start site region 84855	34 bp downstream
Tssr84856	transcription start site region 84856	23 bp downstream
Tssr84857	transcription start site region 84857	88 bp upstream
Tssr84858	transcription start site region 84858	107 bp upstream
Tssr89313	transcription start site region 89313	322 bp upstream
Tssr89314	transcription start site region 89314	294 bp upstream
Tssr89315	transcription start site region 89315	271 bp upstream
Tssr89316	transcription start site region 89316	251 bp upstream
Tssr89317	transcription start site region 89317	242 bp upstream
Tssr89318	transcription start site region 89318	218 bp upstream
Tssr89319	transcription start site region 89319	208 bp upstream
Tssr89320	transcription start site region 89320	195 bp upstream
Tssr89321	transcription start site region 89321	170 bp upstream
Tssr89322	transcription start site region 89322	87 bp upstream
Tssr89323	transcription start site region 89323	35 bp upstream
Tssr89324	transcription start site region 89324	7 bp upstream
Tssr89325	transcription start site region 89325	3 bp downstream
Tssr89326	transcription start site region 89326	43 bp downstream
Tssr89327	transcription start site region 89327	164 bp downstream