rs256277512 SNP Detail

Summary

• ID
  rs256277512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACACT GGAGACACGC
  AACAAAGAGA GGCAAGATAT ATTTGGTTTC ATGGGCTGAG AGGTTTCGTG GCTCCATCAC
  TTTCATGTCT CATGGCAACA CAGAGGCACG TTGATGTAAA GGTAGAGAAA AGCTGCTCAC
  CTTGGCATCC AGGAATCAGA GAAAGATGAA GAGGGACCTT AATGTCCTTT AAGAGAATGC
  Y
  CATTTAATGA CTTACGTTGT CCTATCAGGC TCTATCTTTT AAGTTCTACC AGCTTCCAAT
  AGTAGCACTG GATAATGAAT ATGTCTATGG ATGAATCCAT TGACTAGGCT AGAACATTCC
  TTATACAATC ACTTCCCAAA AGTATTCAAC ACATGAGTTT TGGCGAGACA TTACCAAGGA
  CTACATTACA GTCCTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809789	CHEV_6_65727795	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256277512					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	840 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	1187 bp upstream
Tssr56854	transcription start site region 56854	1193 bp upstream
Tssr61222	transcription start site region 61222	1835 bp downstream
Tssr61223	transcription start site region 61223	1888 bp downstream
Tssr61224	transcription start site region 61224	1896 bp downstream
Tssr61225	transcription start site region 61225	1913 bp downstream
Tssr61226	transcription start site region 61226	1972 bp downstream