About   Help   FAQ
rs256286014 SNP Detail
Summary
  • ID
    rs256286014
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr14:66212456 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGGTCAC CTGGCCTTCT
TGTCATCTCC CTGAAGGATG CTCTGGAGGA CACTAGGGAT TCTGAAATGA AGCTGAAGGC
ATTCCCGGAA GTGTGTAACG AGACCATGAT GGCCCTCTGG GAGGAGTGCA AGCCCTGCCT
GAAGCATACC TGCATGAAGT TCTATGCACG TGTCTGCAGG AGCGGCTCAG GGCTGGTCGG
Y
CAGCAGGTGA GAAGGAGAGA TGTCCACAGC CTGGGTTCTG GATGGGGAAT GTGGAGAATC
CATGAAATAG GCCTCATTCC ATATGCTGGG TACAGTTGAT TAGCATTGCT TGACTGCACA
TCGTTCTAGT GTCATGGTCG ATTGGTGATG TCTGCTTGGC AGGTACCATC TCTTTCAAGA
CCTTTAACTG GTTGGGTAAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss391367413 MGP_WTSI_14_66593844 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256286014 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss391367413 MGP_WTSI_14_66593844 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:66212456 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clu clusterin within coordinates
Tssr126263 transcription start site region 126263 1680 bp downstream
Tssr126264 transcription start site region 126264 1639 bp downstream
Tssr126265 transcription start site region 126265 1611 bp downstream
Tssr126266 transcription start site region 126266 1572 bp downstream
Tssr126267 transcription start site region 126267 745 bp downstream
Tssr126268 transcription start site region 126268 91 bp downstream
Tssr126269 transcription start site region 126269 29 bp downstream
Tssr126270 transcription start site region 126270 575 bp upstream
Tssr126271 transcription start site region 126271 593 bp upstream
Tssr126272 transcription start site region 126272 618 bp upstream
Tssr126273 transcription start site region 126273 645 bp upstream
Tssr126274 transcription start site region 126274 689 bp upstream
Tssr126275 transcription start site region 126275 698 bp upstream
Tssr126276 transcription start site region 126276 731 bp upstream
Tssr126277 transcription start site region 126277 796 bp upstream
Tssr126278 transcription start site region 126278 832 bp upstream
Tssr126279 transcription start site region 126279 1893 bp upstream
Tssr126280 transcription start site region 126280 1923 bp upstream
Tssr129260 transcription start site region 129260 1648 bp upstream
Tssr129261 transcription start site region 129261 1609 bp upstream
Tssr129262 transcription start site region 129262 1596 bp upstream
Tssr129263 transcription start site region 129263 1580 bp upstream
Tssr129264 transcription start site region 129264 1527 bp upstream
Tssr129265 transcription start site region 129265 113 bp upstream
Tssr129266 transcription start site region 129266 80 bp upstream
Tssr129267 transcription start site region 129267 64 bp upstream
Tssr129268 transcription start site region 129268 within coordinates
Tssr129269 transcription start site region 129269 691 bp downstream
Tssr129270 transcription start site region 129270 712 bp downstream
Tssr129271 transcription start site region 129271 756 bp downstream
Tssr129272 transcription start site region 129272 1928 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory