rs256299075 SNP Detail

Summary

• ID
  rs256299075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGCTGAG AGGGAGGCTG
  GAGATTGGGT TCCCTGGTCT GAGAGAGGAG ACCTCTGGGT CTGAGGAAGG AGGCCTAGGC
  TCTGGACCCC CGAGTTTGAG AGAGGAGTGC TGGGGTCTGG ACTCCTGAGT CTGAGGAAGG
  AGGGGGTGAA AGGAAGCTGA CACCGGAATC TGCACTCCAG GGAACTTAAA GAAATATGGC
  Y
  GGGAACTAAG AATTCTGAGA CCTGGCAGAT AGAGGCTGGA GAAATACACT GGGTTTTGAA
  GCTGTAGGGC TGAACGTATT GCTTGGCATA AGGATTGCAG ATCCTGAGCA GAACTTGAGA
  TGGTGCTTAT GCTCCTGATA CCCAAGGGAT GCCAGGCCAG AGATGAGGAA CCTCGGGTCC
  CAGGCTTATC CGGAATCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370565849	MGP_WTSI_7_4472347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256299075					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370565849	MGP_WTSI_7_4472347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	782 bp proximal
Rr641974	regulatory region 641974	1879 bp distal
Rr641975	regulatory region 641975	684 bp proximal
Rr641976	regulatory region 641976	1773 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1334 bp downstream
Tssr64335	transcription start site region 64335	263 bp downstream
Tssr64336	transcription start site region 64336	925 bp upstream
Tssr64337	transcription start site region 64337	1068 bp upstream
Tssr70484	transcription start site region 70484	1131 bp downstream
Tssr70485	transcription start site region 70485	1682 bp downstream