rs256301797 SNP Detail

Summary

• ID
  rs256301797
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCACAA GGTTGCTGAA
  TTTGGCCAGG TTAGTTTGCA TTGTGTCCTC AGTTGATTGG TTGGTGGTCT GGCTACTTAC
  TGGTGATTGG TTCGGGGTGA GCATCTGACT CAACCCTAAA GCCAATGAGC TCCTTGCTCT
  GGGAGTCTGG CGTGGGCAGT GGCTGCCATT TTCTTTTGTT GGAGAAGGAT GAGGCAGAAA
  T
  GACTCGGAAG GAGAGTTTCT GGTTTCTTCC AGGCTCCACA CGGCCTTGAT CTAGAATGTT
  CCTGACATCT AGCTATGTGT CTGCCCTTGG CTTAGAATTC CTCTTTTTGC GGGGCTAGTT
  CCACAGGTTT CTCTTACTTT CCTATGAGAA AGAGCTGTCG AGAGCTGGAA AAATACTCCG
  GGGTCAGGGT AGTTTTCCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390081	CHEV_4_141375526	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256301797					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546922 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	534 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	240 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1712 bp downstream
Tssr40106	transcription start site region 40106	1681 bp downstream
Tssr40107	transcription start site region 40107	1629 bp downstream
Tssr40108	transcription start site region 40108	567 bp downstream
Tssr40109	transcription start site region 40109	532 bp downstream
Tssr40110	transcription start site region 40110	509 bp downstream
Tssr40111	transcription start site region 40111	1714 bp upstream
Tssr40112	transcription start site region 40112	1742 bp upstream
Tssr40113	transcription start site region 40113	1771 bp upstream
Tssr44369	transcription start site region 44369	1714 bp upstream
Tssr44370	transcription start site region 44370	1674 bp upstream
Tssr44371	transcription start site region 44371	1643 bp upstream
Tssr44372	transcription start site region 44372	1612 bp upstream
Tssr44373	transcription start site region 44373	1325 bp upstream
Tssr44374	transcription start site region 44374	479 bp upstream
Tssr44375	transcription start site region 44375	246 bp upstream
Tssr44376	transcription start site region 44376	228 bp upstream
Tssr44377	transcription start site region 44377	373 bp downstream
Tssr44378	transcription start site region 44378	492 bp downstream
Tssr44379	transcription start site region 44379	1741 bp downstream
Tssr44380	transcription start site region 44380	1753 bp downstream