rs256310366 SNP Detail

Summary

• ID
  rs256310366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79440693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTGAT GCTCAGACCA
  AACTTGCAGA AGAAATGAGA GGGCAGGCGC AAGACTGACA GGACAATGCT TTAAATATGG
  CATAAACTGC AGGGGTAGGT GGGAAGTGCA GGTGGGAGGA TGGCACACAC CTTTAATCCT
  AGCACTGGGA GATGGGCAGA TAGATCTCTG TGAGTTCAAG GCCAGCCTAG GCTACAAATC
  R
  AGTACAGGAC AGCCAGGGTC TGTTACACAG AGAAACTCTG CCTCAAACAA GCAAACAACA
  AAAAGGGCTC AAATCCTGAA TTCTATACAG ATGTGTTAGA GAAATGCATC TCACTTTTTG
  TATAAAAAAT GAATTTGGGG GCTGATTTGG TTTGGCTAGC ATGCCTGAGG CCTGACATTT
  AGTCCCCAGC ACCTCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss358583925	MGP_WTSI_3_79337308	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs256310366					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358583925	MGP_WTSI_3_79337308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79440693 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	613 bp distal
Rr375221	regulatory region 375221	within coordinates
Rr578538	regulatory region 578538	995 bp distal
Tssr29583	transcription start site region 29583	1363 bp downstream
Tssr33705	transcription start site region 33705	1716 bp upstream
Tssr33706	transcription start site region 33706	1698 bp upstream
Tssr33707	transcription start site region 33707	1680 bp upstream
Tssr33708	transcription start site region 33708	1658 bp upstream
Tssr33709	transcription start site region 33709	1640 bp upstream
Tssr33710	transcription start site region 33710	1602 bp upstream
Tssr33711	transcription start site region 33711	1582 bp upstream
Tssr33712	transcription start site region 33712	1544 bp upstream
Tssr33713	transcription start site region 33713	1500 bp upstream
Tssr33714	transcription start site region 33714	1299 bp upstream
Tssr33715	transcription start site region 33715	1211 bp upstream
Tssr33716	transcription start site region 33716	541 bp upstream