rs256317411 SNP Detail

Summary

• ID
  rs256317411
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148782577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTCCT CCTCCTCCTC
  CTCCTCCTCC TCCTCCTTTC TCTTCATCGT ATTAACCAGT AATGGCACGG ACAGCTCCTG
  CCAAGGCTGG CTGTCTCTTT GGTAGAGAAA GCACCACACA GCTCTGCCCG TCCAGTTCAG
  GCTGCTTACT ACACAGCCAA GTTTGTCCTA GTAATCTACA TTTAATAGGC AAGGTATAGG
  M
  GGAAATTTAA CGTGTCAGTA AACTCCAAAC AAGAACTGAA CTAGCCTTAC CTTGTCAGAA
  GTCCTCGGTC CACACAGAAC ACCACTTATT ACCTCCCTTC AATCTGAGGC AAGTGGTCCA
  AGAGAAGGAG ATGTAAGCCT TCGGAAGAGG CTTCTGGCCA GACCAGTCAC AACACCACTA
  CTGGGATCCT CCGAAGCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017233	CHEV_3_148739905	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256317411					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148782577 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	714 bp distal
Rr587253	regulatory region 587253	120 bp proximal
Tssr36091	transcription start site region 36091	148 bp downstream
Tssr36092	transcription start site region 36092	173 bp downstream
Tssr36093	transcription start site region 36093	210 bp downstream
Tssr36094	transcription start site region 36094	238 bp downstream
Tssr36095	transcription start site region 36095	295 bp downstream
Tssr36096	transcription start site region 36096	400 bp downstream