rs256322979 SNP Detail

Summary

• ID
  rs256322979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5775187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGAGG ATAATTCAAC
  AGAAAGAGGA AACCATAAAG ATCAATTTAC CCCAGCCAAT TTCACATTAA AATGAAATAC
  ATAGCCTGTT TTTATTTGGC TTTTAGGCCA TGCCACTGAG AAAATCTTAT GCATTCACAA
  TATTATAGTT TAATATATGA CAATAAGAGT GTATTTCTGA ATAATGTCAT GTATTTTATA
  Y
  ACACAGTGTT TTGCAGATGA AGATGTTACA AGTTTATTTG TAAGATTCAT TTCAAAAGAT
  ACATATTAAT ACATATTTTT CTCTTTCTAA CACCTCAGCA TAGAGCTATG GCCAGATATA
  ACAGCATGAA TATGTAATCC TAGCAGTAAC GAGTCTGTAA TTATTTGACC ATAAACAAGA
  GCCAAGAACC TAAATACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223070	CHEV_13_5724434	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256322979					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5775187 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	543 bp upstream
Gm57599	predicted gene, 57599	284 bp upstream
Rr387902	regulatory region 387902	481 bp downstream
Rr474521	regulatory region 474521	1679 bp distal
Rr474522	regulatory region 474522	475 bp distal
Tssr121308	transcription start site region 121308	730 bp upstream