rs256331438 SNP Detail

Summary

• ID
  rs256331438
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105245000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGTGCAA TTCCCAACAG
  TTGACCAGGA ACGTTCCTTT TGGGTTCTTG TGGCAAAGTC CCAGAACCAC TTGCGGTTAC
  CTATGGCCAA GAAATCAAAA ATCCTTCGGT GAAGCTGGGT TATGCACACC TTGGGCTTGC
  ACTGGGGCCC AGGGATAGGT TGGTATAGCA GATAACTACA TGGAGCAAAG AAGCATAGTT
  W
  GCAGTTGAAT AAATGGATCA AAAATCAAAA GCCTGCAGCA AGGTGCACAT GACCAACCCA
  GTGATATGAA GAGTTGGGGA AAGTCAGAGA AAGAGGAAAC GAACTGAAAT CTGAGGTGGG
  CATTATACGG TAGACAAGAA AGGAAGCCAA AGACAAATTT GGTAAGCAGG GAATAGTGTG
  GAGTTTCTGG AGCCAATGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss372621643	MGP_WTSI_7_112744307	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs256331438					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372621643	MGP_WTSI_7_112744307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105245000 () rs orientation: forward

Symbol	Name	Function Class
Hpx	hemopexin	within coordinates
Tssr68381	transcription start site region 68381	485 bp upstream
Tssr74058	transcription start site region 74058	586 bp upstream
Tssr74059	transcription start site region 74059	254 bp upstream
Tssr74060	transcription start site region 74060	246 bp upstream
Tssr74061	transcription start site region 74061	198 bp upstream
Tssr74062	transcription start site region 74062	174 bp upstream
Tssr74063	transcription start site region 74063	164 bp upstream
Tssr74064	transcription start site region 74064	137 bp upstream
Tssr74065	transcription start site region 74065	111 bp upstream
Tssr74066	transcription start site region 74066	530 bp downstream
Tssr74067	transcription start site region 74067	569 bp downstream
Tssr74068	transcription start site region 74068	580 bp downstream
Tssr74069	transcription start site region 74069	622 bp downstream