rs256331929 SNP Detail

Summary

• ID
  rs256331929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104422659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTTTC CGATACTTTC
  GCCAGACATT GTTTGCTTGC TTAGGACTTG GAAAGTGCAG TGGGCATATT TTTTCTCTAT
  GGTTTAATGC CAGGGGCTTT TTCCTGGTAA ATGAAAGTGA AAGTGCTATG TCGGGGTGGT
  ATTTTATCTT TAAAGGCTGA ACTGGCAGCT GATGTGGAGG GGGAGGTGGG ATTGGAAAGC
  W
  AGAAGAACCG GTTCTAAATG TTTTGTTTGT TTATCTTGAG ATCTCAGCAG GGCTCCCGTG
  TTGTCGCTGC GGCCCCCACC CCCAACCTTT TTAGGGGGCT GACTTAGGCT TTATTTTCTT
  TTGAGCAATC ATTGAAGTTT CTTTCAATCT ACTACAAACA AGCAAAAACA AACAAACAAA
  CAAACAAACA AAAACAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514935	CHEV_13_105076231	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256331929					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104422659 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	1684 bp upstream
Gm60746	predicted gene, 60746	363 bp downstream
Gm60750	predicted gene, 60750	949 bp upstream
Rr369763	regulatory region 369763	660 bp upstream
Rr403946	regulatory region 403946	within coordinates
Rr485428	regulatory region 485428	542 bp distal
Rr485429	regulatory region 485429	1047 bp distal
Rr485430	regulatory region 485430	459 bp proximal
Rr485431	regulatory region 485431	1054 bp proximal
Rr485432	regulatory region 485432	1733 bp proximal
Tssr120915	transcription start site region 120915	882 bp upstream
Tssr120916	transcription start site region 120916	938 bp upstream
Tssr120917	transcription start site region 120917	967 bp upstream
Tssr120918	transcription start site region 120918	985 bp upstream
Tssr120919	transcription start site region 120919	1206 bp upstream
Tssr120920	transcription start site region 120920	1301 bp upstream
Tssr120921	transcription start site region 120921	1340 bp upstream
Tssr120922	transcription start site region 120922	1357 bp upstream
Tssr120923	transcription start site region 120923	1704 bp upstream
Tssr120924	transcription start site region 120924	1751 bp upstream
Tssr120925	transcription start site region 120925	1781 bp upstream