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rs256333292 SNP Detail
Summary
  • ID
    rs256333292
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142132712 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGTATGGT CTCCCTATCC
TACTGAAGTA CTACTATCAG TGATAGAATG GGGACAGGAG AGATGCCCTG TCCCTCCAGC
CACGTGCGTG CGTATACCAT TGCTCTTAGC TTCTGTTGAA AGTTATGCAG CTGAAATCCA
CAGAGTCAGC ATCCACAAAT CAGGGCACCA GAGAGTAGAG CAGCTCTAGA TGGAAGTGAC
Y
GGAGCTCCAG ATGGGAGGAG GACTCAAGGG CTGACCAGTC ATGACCACTC AGCAGTGGTT
CTCACCTATG TGAGGTGCAA TAGCACCTTG GCAGATCCTC AGCCTAGTGG CTGCATGTCA
GCTGAGTACT CATTTCTGGC TCCTAGTGAT CCTTCATTTT TACTCTGTGA AAAGCCCTGG
TCATTGCTGT GGGTGGACCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453191 MGP_WTSI_7_149764880 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256333292 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453191 MGP_WTSI_7_149764880 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142132712 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19965 CpG island 19965 1337 bp proximal
Gm56421 predicted gene, 56421 1057 bp downstream
H19 H19, imprinted maternally expressed transcript 829 bp upstream
Mir675 microRNA 675 1828 bp upstream
Rr27 regulatory region 27 1173 bp proximal
Rr370601 regulatory region 370601 1273 bp upstream
Rr658231 regulatory region 658231 340 bp distal
Rr658232 regulatory region 658232 284 bp proximal
Rr658233 regulatory region 658233 895 bp proximal
Rr658234 regulatory region 658234 1235 bp proximal
Rr658235 regulatory region 658235 1331 bp proximal
Tssr2460 transcription start site region 2460 1715 bp downstream
Tssr2461 transcription start site region 2461 1049 bp downstream
Tssr70215 transcription start site region 70215 1999 bp downstream
Tssr70216 transcription start site region 70216 1935 bp downstream
Tssr70217 transcription start site region 70217 1918 bp downstream
Tssr70218 transcription start site region 70218 1568 bp downstream
Tssr70219 transcription start site region 70219 1530 bp downstream
Tssr70220 transcription start site region 70220 1418 bp downstream
Tssr70221 transcription start site region 70221 1379 bp downstream
Tssr70222 transcription start site region 70222 1321 bp downstream
Tssr70223 transcription start site region 70223 1179 bp downstream
Tssr70224 transcription start site region 70224 1134 bp downstream
Tssr70225 transcription start site region 70225 1096 bp downstream
Tssr70226 transcription start site region 70226 1001 bp downstream
Tssr70227 transcription start site region 70227 919 bp downstream
Tssr70228 transcription start site region 70228 906 bp downstream
Tssr75829 transcription start site region 75829 1597 bp upstream
Tssr75830 transcription start site region 75830 1570 bp upstream
Tssr75831 transcription start site region 75831 1549 bp upstream
Tssr75832 transcription start site region 75832 1483 bp upstream
Tssr75833 transcription start site region 75833 1406 bp upstream
Tssr75834 transcription start site region 75834 1132 bp upstream
Tssr75835 transcription start site region 75835 1100 bp upstream
Tssr75836 transcription start site region 75836 1078 bp upstream
Tssr75837 transcription start site region 75837 1055 bp upstream
Tssr75838 transcription start site region 75838 985 bp upstream
Tssr75839 transcription start site region 75839 963 bp upstream
Tssr75840 transcription start site region 75840 934 bp upstream
Tssr75841 transcription start site region 75841 907 bp upstream
Tssr75842 transcription start site region 75842 890 bp upstream
Tssr75843 transcription start site region 75843 884 bp upstream
Tssr75844 transcription start site region 75844 854 bp upstream
Tssr75845 transcription start site region 75845 821 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory