rs256333391 SNP Detail

Summary

• ID
  rs256333391
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86413740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACACCAG ATCGGGTCCC GGCTTcgggc
  gccccggggc tcgccccgcg cctgccgccg cccgcgcgcc gACTGCCCGC CGCGTCCTCC
  TGACAGCTGC GGCGGCGGTG ATGCAGAGGA GGAGGGCGCT GCCGGCGGCG GTGCTCATGG
  K
  GGCGGTCGGC GCCCGGGTGT AATGCGAGCG TCATGGTGGA GATGCTGGCT TCGCGGCGGT
  GAGAGAGCAA AGGAGGGCGA GAGTCAGCCA AGGGCGGAAG ACAAACCAGT TCCGATGCTT
  TCTTTCCTCT GTCGCTTTCC CCCACTCTAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325714171	CHEV_18_86565007	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256333391					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86413740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	1250 bp distal
Cpgi10353	CpG island 10353	within coordinates
Gm54041	predicted gene, 54041	1840 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	within coordinates
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	833 bp downstream
Tssr152243	transcription start site region 152243	812 bp downstream
Tssr152244	transcription start site region 152244	752 bp downstream
Tssr152245	transcription start site region 152245	686 bp downstream
Tssr152246	transcription start site region 152246	647 bp downstream
Tssr152247	transcription start site region 152247	602 bp downstream
Tssr152248	transcription start site region 152248	382 bp downstream
Tssr152249	transcription start site region 152249	330 bp downstream
Tssr152250	transcription start site region 152250	52 bp downstream