rs256341161 SNP Detail

Summary

• ID
  rs256341161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117549210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCAAAT ACAGCTAGAT
  TTCTGATTGT CGGACTCTAT ACTTAACACT GGATGAGTGA AAGCCACAAA CTGGGTGTGA
  TGTCACATGC CTGTAACAGC GCAATGAGAG ACTGAGGTGA GAAGAAGAGA CCAAGGCTAA
  GTAAAACACA GACCAGCCTG GACTATATAT CAAAATACAC TTCAAAACAA AACATTGGGG
  Y
  GGGGATGGGG GATTTCATCC TCACAAAGGC TTGCTGGTAA CACCTATGGT TATGATTAGT
  GTGCTTACCC TGTAAGTTCC TGGTTTCAAT CTTCAGTCTC TCAAAGATTT AGTACTCGAA
  GTTTACCGTG TATACAAAGG TACACCAAAG GATGTCTCCC CAAAACAGAC TCCATGTCAT
  ATTTGGAGAT GGCGTCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498910	CHEV_10_117150361	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256341161					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117549210 () rs orientation: forward

Symbol	Name	Function Class
Gm56970	predicted gene, 56970	1772 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Rr212986	regulatory region 212986	591 bp proximal
Rr224309	regulatory region 224309	1609 bp distal
Rr385357	regulatory region 385357	754 bp downstream
Tssr95924	transcription start site region 95924	1549 bp downstream
Tssr99470	transcription start site region 99470	1933 bp downstream