rs256348879 SNP Detail

Summary

• ID
  rs256348879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69692146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGCCCC CATCTTTAAG
  CGCGTTTGGC TGGCCCGCCG GCGCTCGGAA GTCCAGGCGC TTCTGTCGTT GTTCTTGAAG
  CTGTGGTGAC CGTGGGATCC GAATCTTTGA GGTGAGCTTC TTGGAAACTG AGGAGAAGGT
  ACGAAGGGCT GTGCTATGCG CAGGCCTCAC CTTCCTCTCC GCGCCGCCGC GTGGGCCGCG
  M
  GGCCCGTGGC CGTGTGCTGG ACCGCGGCCC GAGGGGGCGC GGGCCTCGGC GAGGCCACGG
  AGCGGGCCCC GGCCAGAGAT GCGGGCGCCT GGGGCTTTCC ACGTGGCAGG GATCCCGGCG
  GGCCGGTGTG GGAGGATGCG GCTCTCGCGG GGCCTTTAGG CAGAGGCTCG CCGCATCCTC
  ACGGCGTCCT TTCGGTTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354379930	MGP_WTSI_2_69699859	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256348879					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354379930	MGP_WTSI_2_69699859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69692146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			within coordinates
Rr397021	regulatory region 397021			1145 bp downstream
Rr397022	regulatory region 397022			139 bp downstream
Rr558483	regulatory region 558483			230 bp distal
Rr558484	regulatory region 558484			within coordinates
Ssb	small RNA binding exonuclease protection factor La			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr18173	transcription start site region 18173			218 bp downstream
Tssr18174	transcription start site region 18174			167 bp downstream
Tssr18175	transcription start site region 18175			149 bp downstream
Tssr18176	transcription start site region 18176			373 bp upstream