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rs256359613 SNP Detail
Summary
  • ID
    rs256359613
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982130 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATTCTTCTT AAATCTTGCA
TATCTTTATC TCATCAAACA AAGGGGTCCA AGTTCAGTTT TAAATAAGCA TTTAAGGCAG
ATACTGACAA CAATCTCATT TTTTAAAATG TTGTCTTGAG ACAAATAATT TGAAATTTCT
AAATTGGGAG TTTGAATCAC TTTTGAAAGC TCTTACTTTC TTAAGCTGTC AGGTTTGTAC
Y
GACATGGAGT AAACAGCTAT CATAAACGTA AATCTCCAAA ACTAGTAGAA ATTATGTCAT
GATTGATGGT TAAGATACCA TGTCAGGGAT TGTCTTTTCT TAGAAGTAGT GAAAGCTACT
TACTATGACA ATCAGACCTT CCTTGTATGT CAAAATGCTG GTGTGGAAGG TGGTGGAGCC
CGTGCTGCTC TGTCTTAACT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888775 MGP_WTSI_1_151953509 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256359613 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888775 MGP_WTSI_1_151953509 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982130 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1730 bp distal
Rr24983 regulatory region 24983 1834 bp distal
Tssr9259 transcription start site region 9259 1985 bp downstream
Tssr9260 transcription start site region 9260 1933 bp downstream
Tssr9261 transcription start site region 9261 1914 bp downstream
Tssr9262 transcription start site region 9262 1893 bp downstream
Tssr9263 transcription start site region 9263 1881 bp downstream
Tssr9264 transcription start site region 9264 1832 bp downstream
Tssr9265 transcription start site region 9265 1805 bp downstream
Tssr9266 transcription start site region 9266 1716 bp downstream
Tssr9267 transcription start site region 9267 1381 bp downstream
Tssr9268 transcription start site region 9268 1311 bp downstream
Tssr9269 transcription start site region 9269 974 bp downstream
Tssr9270 transcription start site region 9270 943 bp downstream
Tssr9271 transcription start site region 9271 920 bp downstream
Tssr9272 transcription start site region 9272 889 bp downstream
Tssr9273 transcription start site region 9273 845 bp downstream
Tssr9274 transcription start site region 9274 825 bp downstream
Tssr9275 transcription start site region 9275 793 bp downstream
Tssr9276 transcription start site region 9276 779 bp downstream
Tssr9277 transcription start site region 9277 723 bp downstream
Tssr9278 transcription start site region 9278 702 bp downstream
Tssr9279 transcription start site region 9279 684 bp downstream
Tssr9280 transcription start site region 9280 584 bp downstream
Tssr9281 transcription start site region 9281 564 bp downstream
Tssr9282 transcription start site region 9282 530 bp downstream
Tssr9283 transcription start site region 9283 515 bp downstream
Tssr9284 transcription start site region 9284 503 bp downstream
Tssr9285 transcription start site region 9285 489 bp downstream
Tssr9286 transcription start site region 9286 410 bp downstream
Tssr9287 transcription start site region 9287 97 bp upstream
Tssr9288 transcription start site region 9288 213 bp upstream
Tssr9289 transcription start site region 9289 230 bp upstream
Tssr9290 transcription start site region 9290 386 bp upstream
Tssr9291 transcription start site region 9291 432 bp upstream
Tssr9292 transcription start site region 9292 551 bp upstream
Tssr9293 transcription start site region 9293 580 bp upstream
Tssr9294 transcription start site region 9294 600 bp upstream
Tssr9295 transcription start site region 9295 616 bp upstream
Tssr9296 transcription start site region 9296 638 bp upstream
Tssr9297 transcription start site region 9297 647 bp upstream
Tssr9298 transcription start site region 9298 673 bp upstream
Tssr9299 transcription start site region 9299 695 bp upstream
Tssr9300 transcription start site region 9300 712 bp upstream
Tssr9301 transcription start site region 9301 846 bp upstream
Tssr9302 transcription start site region 9302 876 bp upstream
Tssr9303 transcription start site region 9303 938 bp upstream
Tssr9304 transcription start site region 9304 962 bp upstream
Tssr9305 transcription start site region 9305 980 bp upstream
Tssr9306 transcription start site region 9306 992 bp upstream
Tssr9307 transcription start site region 9307 996 bp upstream
Tssr9308 transcription start site region 9308 1029 bp upstream
Tssr9309 transcription start site region 9309 1043 bp upstream
Tssr9310 transcription start site region 9310 1074 bp upstream
Tssr9311 transcription start site region 9311 1086 bp upstream
Tssr9312 transcription start site region 9312 1111 bp upstream
Tssr9313 transcription start site region 9313 1131 bp upstream
Tssr9314 transcription start site region 9314 1142 bp upstream
Tssr9315 transcription start site region 9315 1236 bp upstream
Tssr9316 transcription start site region 9316 1419 bp upstream
Tssr9317 transcription start site region 9317 1696 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory