rs256385145 SNP Detail

Summary

• ID
  rs256385145
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34551179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAGGGCC CGTTTGCCCC
  CGTCCTTCCC GGCCCCGCCC GAGCCGAGCC TCGGCCGCCC GCCACCATGG CGTGCGGAGC
  CACTCTGAAA AGGACTCTGG ATTTCGACCC GCTGCTGAGC CCCGCATCTC CGAAGCGGAG
  GCGGTGCGCG CCTTTGTCGG CGCCGGCTTC GGCTGCCGCC TCCCCTGCCG CCGCCACCGC
  M
  GCCGCCGCCG CCTCGGCCGC GGCCGCCTCG CCGCAGAAGT ATCTCCGGAT GGAGCCTTCC
  CCCTTCGGCG ACGTCTCTTC CCGGCTCACC ACAGGTGGGC CTCGGCCCCG GGGCTGCCGG
  GGTGGGCTGC GGCCGGGAGC TTGGGTGCGG ACACAAAGGG AAGGAAGGGC CTGAACCGAG
  GTGGGGGTGG TGTCGGCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361140650	MGP_WTSI_4_34498428	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256385145					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361140650	MGP_WTSI_4_34498428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34551179 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	within coordinates
Gm68522	predicted gene, 68522	358 bp downstream
Gm70378	predicted gene, 70378	622 bp upstream
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	549 bp downstream
Tssr36766	transcription start site region 36766	517 bp downstream
Tssr36767	transcription start site region 36767	491 bp downstream
Tssr36768	transcription start site region 36768	263 bp downstream
Tssr36769	transcription start site region 36769	250 bp downstream
Tssr36770	transcription start site region 36770	234 bp downstream
Tssr41190	transcription start site region 41190	258 bp downstream