rs256394457 SNP Detail

Summary

• ID
  rs256394457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86288609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTCTTGG GTAGAGAGGT AGGAAGGGTG
  GTGTGAGGAA GACTCTAGAT ATTTCCAAGC AGAGCAAGCT AAAGGCATTC GGGAGGAGAC
  AAGAAGATGA GCTGTGAGTG TGAAATGACT TGGGTGACAT GGCTTCCTTT GTCAATCCAA
  Y
  CTATCTGTAT GGGCTATCCT CAGCCCTCTG GTGTACAGTG CCACTAAGAG ACCTCTGCTT
  GCACCCAAGG TTAGTTACAC TCTCAGATAT CAGCTGCCTA GTACTTTTCT TGGCCATTTA
  TTGTTCATTT GCCCCTTCCC CAGACAGCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828139	CHEV_1_88257462	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256394457					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86288609 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	552 bp distal
Gm71192	predicted gene, 71192	922 bp upstream
Ncl	nucleolin	1487 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1271 bp downstream
Tssr7749	transcription start site region 7749	1297 bp downstream
Tssr7750	transcription start site region 7750	1195 bp downstream
Tssr12788	transcription start site region 12788	1890 bp upstream
Tssr12789	transcription start site region 12789	1841 bp upstream
Tssr12790	transcription start site region 12790	1506 bp upstream
Tssr12791	transcription start site region 12791	1401 bp upstream
Tssr12792	transcription start site region 12792	921 bp upstream