rs256394604 SNP Detail

Summary

• ID
  rs256394604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GGGGAGAAAA GTCTCCTGGG
  W
  AGCTGAGCTC CAAAATTAAA CAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss924338317	MGP_WTSI_19_55252936	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	T	A	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs256394604					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	T	A	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924338317	MGP_WTSI_19_55252936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241368 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1079 bp proximal
Rr370538	regulatory region 370538	948 bp upstream
Rr406037	regulatory region 406037	1699 bp upstream
Rr549782	regulatory region 549782	746 bp distal
Rr549783	regulatory region 549783	87 bp proximal
Rr549784	regulatory region 549784	444 bp proximal
Rr549785	regulatory region 549785	1573 bp proximal
Rr549786	regulatory region 549786	1734 bp proximal
Tssr5558	transcription start site region 5558	1093 bp downstream
Tssr157068	transcription start site region 157068	1033 bp downstream
Tssr157069	transcription start site region 157069	992 bp downstream
Tssr157070	transcription start site region 157070	973 bp downstream
Tssr157071	transcription start site region 157071	705 bp upstream
Tssr157072	transcription start site region 157072	757 bp upstream
Tssr157073	transcription start site region 157073	964 bp upstream
Tssr157074	transcription start site region 157074	1030 bp upstream
Tssr157075	transcription start site region 157075	1045 bp upstream