rs256397877 SNP Detail

Summary

• ID
  rs256397877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24024916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAAGGC AAGTTTAAAA
  TACACTAGAG TCTACATAGA GAGGCAGACA CAGCAAGATG GGGAAGTTTT TCTAAGGCCT
  CAGATGCTAC CTGATAAAAT TCTTAGACTT TGAATAGGTA CAAGCTAGTA GTATCAGTAT
  CAGAATCAGA ATCTAGCAGT AACAGTAGCA GTAGCAGTTG TTAGCAATAG CCGTCATCAT
  Y
  GTAATCCTCT TTAAAAATCA ATAGATTTCA AAAGGTTATT TATCAGTCAT GGAATGTTAG
  TCCTGACACT AAGTAGAGGT GGGCAAGAAA TGGTTGTTGA AGTGGCTAAG TCTATCCGAA
  ATTAAGATAA CTGGCCTCTG AACTTATACT ATTTCATCCT TTCCACACTA TTACAGTTCT
  AACCAGTGAA CCAGACGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292305	CHEV_13_23932802	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256397877					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24024916 () rs orientation: forward

Symbol	Name	Function Class
Rr475960	regulatory region 475960	1474 bp distal
Rr475961	regulatory region 475961	1391 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	1305 bp downstream
Tssr4012	transcription start site region 4012	1201 bp downstream
Tssr118875	transcription start site region 118875	1491 bp downstream
Tssr118876	transcription start site region 118876	1463 bp downstream
Tssr118877	transcription start site region 118877	1346 bp downstream
Tssr118878	transcription start site region 118878	1313 bp downstream