rs256398559 SNP Detail

Summary

• ID
  rs256398559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107454743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTTGTA CGCAGGTGCG
  AGAGTGAATT CTCTCCTAGT CACTCCCATT CTTGGGGTGT AATAGTGGGG TGATGGGCAA
  GCAACGAATC AGGAGCTGTC ACGCCATATC AGGTGCTGAA ACGTCATGCT GCTGGTTATA
  AAAGCAGCGC CATTTTCCCG GTTCGGAATC TTCCTGAGAA GCAAGCAAGA AAGCTCTTGC
  Y
  GCGGAAGATT CTGGTTTGTT GCGTCTTTCT TGCCGGTCGA GCGGGACGCA ATAATTTGAA
  TTGGTTAATT CTCCCTATTT CCTTCTGGGT TTCTACTGAA ATGATTTTTT TTTTTTTGGT
  ACATACATAT TTTCTGTTTC TAAAAGTTTT GGAATACCTA ATAATTTGTC TAAACATAAC
  TATTGTGTGA CTCAAAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
ss350863665	MGP_WTSI_1_109423590	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
rs256398559					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350863665	MGP_WTSI_1_109423590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107454743 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	201 bp upstream
Serpinb2	serine (or cysteine) peptidase inhibitor, clade B, member 2	1413 bp downstream
Tssr8339	transcription start site region 8339	1990 bp upstream