rs256400919 SNP Detail

Summary

• ID
  rs256400919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCTAGG AATCCAACAG
  GGGTTCTAAG CCCTGGCTAC AGACAAGAAG GAAGCTGAAA TTAAAGTCCC AAGATTTGCA
  GGGGTGAAAA CTCCTCTATT ATAAGCTTGT GGAGAGATGA GAGTGATTGG GTCCTATCAT
  CTGCTGGGAA ATGTGAGGCC TTTGGCTCTA AACTGCCTAT GATTTCCTAA GCAGAAGGGA
  R
  GAAAGGAATG CCAGGAGAGA AAAAGTTGAG CCATTGTCAA AAAGGAAGAA AGAAAGAAAG
  AAAGGAAAGA AGAAAGAAAG AAATGAAATG AGCGTGTGAA GCCAACTGTG TTTCTATCTA
  CCCATTCCTC AATTTCTAGG CTGCACGGAC ACCTTGGGGG ATATGGATTA TTCCATTTTA
  GACCCCAGAG ACCTCTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372043639	MGP_WTSI_7_87486531	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256400919					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372043639	MGP_WTSI_7_87486531	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1147 bp distal
Cpgi19332	CpG island 19332	1238 bp proximal
Hddc3	HD domain containing 3	1459 bp upstream
Rr400403	regulatory region 400403	1244 bp downstream
Rr400404	regulatory region 400404	1298 bp upstream
Rr649870	regulatory region 649870	936 bp distal
Rr649871	regulatory region 649871	1277 bp distal
Rr649872	regulatory region 649872	608 bp distal
Rr649873	regulatory region 649873	978 bp proximal
Rr649874	regulatory region 649874	1422 bp proximal
Tssr67435	transcription start site region 67435	1446 bp upstream
Tssr67436	transcription start site region 67436	1520 bp upstream
Tssr73215	transcription start site region 73215	1635 bp upstream
Tssr73216	transcription start site region 73216	1495 bp upstream
Tssr73217	transcription start site region 73217	1435 bp upstream
Tssr73218	transcription start site region 73218	1414 bp upstream
Unc45a	unc-45 myosin chaperone A	645 bp upstream