rs256403506 SNP Detail

Summary

• ID
  rs256403506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32247160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCACTTT GTCTCCGCAG CTCCTGAGCC ACTGCCTGCT
  GGTGACCTTG GCTAGCCACC ACCCTGCCGA TTTCACCCCC GCGGTGCATG CCTCTCTGGA
  Y
  AAATTCCTTG CCTCTGTGAG CACCGTGCTG ACCTCCAAGT ACCGTTAAGC TGCCTTCTGC
  GGGGCTTGCC TTCTGGCCAT GCCCTTCTTC TCTCCCTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ
ss382906468	MGP_WTSI_11_32197160	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ
rs256403506					SNP	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382906468	MGP_WTSI_11_32197160	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32247160 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	1194 bp downstream
Gm74521	predicted gene, 74521	within coordinates
Hba-a2	hemoglobin alpha, adult chain 2	within coordinates
Rr444569	regulatory region 444569	661 bp distal
Rr444570	regulatory region 444570	136 bp proximal
Rr444571	regulatory region 444571	1906 bp proximal
Tssr100842	transcription start site region 100842	668 bp downstream
Tssr100843	transcription start site region 100843	1 bp downstream
Tssr100844	transcription start site region 100844	372 bp upstream