rs256404847 SNP Detail

Summary

• ID
  rs256404847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7870386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATTCTC CAAATGCATC
  TTGAGAGGTG ACTAGAGGAA GCACAGGGGT TTGTTTTGCC TTTTGTTTTT TTGTTTGTTT
  GCCTGTTTGT TTTTAAGGGA AAAAAATACT CGGAAACAGG AAGACCTGGC TTGGCTTGAA
  TGTGAAGGAG TCACTGAAGT GTAGTGATAT TTGACTTCAG AGGCCCATTT ATTTAATATT
  Y
  TATCGAGGAG CCGAAAGATA AATGTGAGAG TTGTAAAAGT AGAGTAAAGG CTTGAGAGCA
  GTAACTTGAG TTACTCTCAG TAACAATACT CTTACCATTT TATTTATTTA GTTCAGATTA
  TGCTATTTCA AAGAAAAGGT TTTGTTTTTG CTTCAGTTAA TTTAAACCTT CCTTTACTTA
  GTAATTCATG CTAGTAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325523065	CHEV_18_7870384	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256404847					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7870386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	265 bp distal
Gm9993	predicted gene 9993	1273 bp upstream
Rr405554	regulatory region 405554	1118 bp downstream
Rr533616	regulatory region 533616	1310 bp distal
Rr533617	regulatory region 533617	875 bp distal
Rr533618	regulatory region 533618	9 bp distal
Tssr149978	transcription start site region 149978	1892 bp downstream
Tssr149979	transcription start site region 149979	1524 bp downstream
Tssr149980	transcription start site region 149980	1498 bp downstream
Tssr149981	transcription start site region 149981	1234 bp downstream
Tssr149982	transcription start site region 149982	1177 bp downstream
Tssr149983	transcription start site region 149983	1160 bp downstream
Tssr149984	transcription start site region 149984	1057 bp downstream
Tssr149985	transcription start site region 149985	1005 bp downstream
Tssr149986	transcription start site region 149986	659 bp downstream
Tssr149987	transcription start site region 149987	488 bp downstream
Tssr152379	transcription start site region 152379	1262 bp upstream
Wac	WW domain containing adaptor with coiled-coil	within coordinates