rs256413296 SNP Detail

Summary

• ID
  rs256413296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATGTG GGGTGCAGTC
  TTGGCAGGAT GACAGCAGGT TTTCTTTTTT CTTTTTTTTT TTTTTCCTCT TGCCTGCCTT
  CCATTGTGGT TCCCTGAATA GCCACCAGGT ATCTTGGCAA ATTGCACAAT CCAACGAAAC
  CACTGCTTTC ATCATTCATT TATCCTGAGT TTCAGAGAAT CGGGGTACAG ACCAGGGGGA
  R
  TCCTAATATG TACCCCAATA GGCGTTCTTC AGTCCTGTCC AAGGCTAGAA TGAGAATCAC
  AGAAACCAAA CCAAGCCAGT ATGTCTGCCA GTTTTCTTTC TAAAAATAGA AAGTTGATCA
  GGACTGATCT CGGGGTGTGT GTGTGTGTGT GTGTGTGTGA GCTACAGTAT ATGGAGAAGA
  CTTACAAATA AAGAGCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592140	MGP_WTSI_6_108613251	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256413296					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592140	MGP_WTSI_6_108613251	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640218 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	1524 bp distal
Rr399817	regulatory region 399817	1375 bp downstream
Rr636158	regulatory region 636158	1833 bp distal
Rr636159	regulatory region 636159	1270 bp distal
Rr636160	regulatory region 636160	323 bp proximal
Tssr58078	transcription start site region 58078	1480 bp downstream
Tssr58079	transcription start site region 58079	1261 bp downstream
Tssr58080	transcription start site region 58080	914 bp downstream
Tssr58081	transcription start site region 58081	479 bp downstream
Tssr58082	transcription start site region 58082	115 bp downstream
Tssr58083	transcription start site region 58083	1482 bp upstream
Tssr58084	transcription start site region 58084	1756 bp upstream
Tssr62392	transcription start site region 62392	1728 bp downstream