rs256419837 SNP Detail

Summary

• ID
  rs256419837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70705277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCTAC TATTCTGCCT
  TCCAGAGCTC AAAGTACAAA ACACATAATT CAAACACATG ATCCCTCCTT GGGGTCTCTT
  CCTTCATGCA TCGAATTAGA AATAGCCATG TATAAAATGA GATAGAAGAG ACCTTCATCA
  ACAGGTCAAA GAATATAGGT AATTTTGTCT GGGTATGAAG AGCCCACGTA TCAAAGGTTA
  Y
  ATTAGGGAAG GAAGAGGACA CTAACAGTGA CTTTCATTCT CCCCCTCTTC CTGGAGGCCC
  CTGCATTTAG TCCCTCGTGG GCTCATCCAC TCAGCACACA TTTACTAAGC ATCTTCTCAG
  CCTACACTCT GAAGGCAGTG CAGAATAATG TTAGTGTCCC TTCCCCCAGT TAATATGCAG
  TCCAGTTTCC CTGCTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815820	CHEV_6_70678287	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256419837					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70705277 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	920 bp upstream
Gm68839	predicted gene, 68839	1327 bp upstream
Igk	immunoglobulin kappa chain complex	1539 bp downstream
Igkc	immunoglobulin kappa constant	1539 bp downstream
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1482 bp downstream
Tssr1880	transcription start site region 1880	1442 bp downstream
Tssr56957	transcription start site region 56957	1821 bp downstream
Tssr56958	transcription start site region 56958	1805 bp downstream
Tssr56959	transcription start site region 56959	1787 bp downstream
Tssr56960	transcription start site region 56960	1772 bp downstream
Tssr56961	transcription start site region 56961	1756 bp downstream
Tssr56962	transcription start site region 56962	1744 bp downstream
Tssr56963	transcription start site region 56963	1697 bp downstream
Tssr56964	transcription start site region 56964	1686 bp downstream
Tssr56965	transcription start site region 56965	1674 bp downstream
Tssr56966	transcription start site region 56966	1666 bp downstream
Tssr56967	transcription start site region 56967	1646 bp downstream
Tssr56968	transcription start site region 56968	1616 bp downstream
Tssr56969	transcription start site region 56969	1592 bp downstream
Tssr56970	transcription start site region 56970	1573 bp downstream
Tssr56971	transcription start site region 56971	1561 bp downstream
Tssr56972	transcription start site region 56972	1502 bp downstream
Tssr56973	transcription start site region 56973	1491 bp downstream
Tssr56974	transcription start site region 56974	1461 bp downstream
Tssr56975	transcription start site region 56975	1424 bp downstream
Tssr61321	transcription start site region 61321	1784 bp upstream
Tssr61322	transcription start site region 61322	1636 bp upstream
Tssr61323	transcription start site region 61323	1555 bp upstream
Tssr61324	transcription start site region 61324	1478 bp upstream
Tssr61325	transcription start site region 61325	1445 bp upstream
Tssr61326	transcription start site region 61326	1432 bp upstream
Tssr61327	transcription start site region 61327	1406 bp upstream
Tssr61328	transcription start site region 61328	1328 bp upstream