rs256420217 SNP Detail

Summary

• ID
  rs256420217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23120164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTTTTA TCCCATTCCC
  TGGTGGGGTT GCAACGGAGG GGTCGGCCTG GGAGGGGAGC CGCACTCTGC GTGAATCGTT
  TTAGGATGAC TAAGGACTCA TTTAACTGGA TGGCGGCTAC TTTTCAGGGC TTGCCAAGGT
  GGTTTTAAAT TTGGCTAAGA GTCCCCTGAG AGGTTTAAAA TAAAACTGCT TCAGGCTGCA
  R
  GGGAGACTGA TGAAGGAATG GATGGTGGAT TAACTTCTTG ACTAGTTAGC TTTCCTAAGG
  AACGTGATTC AGTGCTGATC TGTTCCCATG TGACTTATTT GGTCTCATGC CTGAAGCCTT
  AGGAGAGAGG TGTGGTCTTT GCTGGAGTTC AAGGCCTCAC GGATGAGTGT GGGGGCGTTC
  CTCTTAGCTG TAGGCCACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402048977	MGP_WTSI_19_23217290	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256420217					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402048977	MGP_WTSI_19_23217290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23120164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	161 bp distal
Gm56648	predicted gene, 56648	1645 bp upstream
Klf9	Kruppel-like transcription factor 9	Intron
Rr405898	regulatory region 405898	1899 bp downstream
Rr545291	regulatory region 545291	1697 bp distal
Rr545292	regulatory region 545292	1564 bp distal
Tssr155579	transcription start site region 155579	1959 bp downstream
Tssr155580	transcription start site region 155580	1849 bp downstream
Tssr155581	transcription start site region 155581	1833 bp downstream
Tssr155582	transcription start site region 155582	1796 bp downstream
Tssr155583	transcription start site region 155583	1767 bp downstream
Tssr155584	transcription start site region 155584	1723 bp downstream
Tssr155585	transcription start site region 155585	1663 bp downstream
Tssr155586	transcription start site region 155586	1537 bp downstream
Tssr155587	transcription start site region 155587	1133 bp downstream
Tssr155588	transcription start site region 155588	1099 bp downstream
Tssr158622	transcription start site region 158622	1827 bp upstream
Tssr158623	transcription start site region 158623	724 bp upstream
Tssr158624	transcription start site region 158624	380 bp upstream