rs256438425 SNP Detail

Summary

• ID
  rs256438425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48049520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTATAC GAAGCATTTC
  TCAAAAGTAT GTTTCCTAAG AAGAAAAGCA TATATTCCAA GAGATCAGGA TATGCTGTTT
  TTAATGGCTT TGTTTTTGTC CTTTTATACT CAATATATTC ATTTAAGGGA TCACTTGGGG
  AGATAGGGAA CATTTTTATT GATCTAAAAC CCAAACGATT TGTGAGGCAG GAGTTTGGAT
  R
  ATTGAGGCTC AGAGGCAAGG GAAACCCATG TGAGCTACAA ACAGAAGTAA GTATAAAGGC
  CTCAGATTTA GTTTACACAA CCTCTTTACA AATTTGGTAA AGGTAGAAGA GGTGGGCCTG
  GGTAGGCACC AAAGATACAC AGATAGAGTC ACTCTCCTGC TGGAGACTTC AGAAAGACAA
  AGAGCAATAG GGAGAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430118	MGP_WTSI_4_48062392	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256438425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430118	MGP_WTSI_4_48062392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48049520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14279	CpG island 14279	789 bp distal
Cpgi14280	CpG island 14280	426 bp distal
Cpgi14281	CpG island 14281	1970 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591930	regulatory region 591930	1832 bp distal
Rr591931	regulatory region 591931	1474 bp distal
Rr591932	regulatory region 591932	173 bp distal
Rr591933	regulatory region 591933	1959 bp proximal
Tssr37201	transcription start site region 37201	1767 bp downstream
Tssr37202	transcription start site region 37202	1632 bp downstream
Tssr37203	transcription start site region 37203	1604 bp downstream
Tssr37204	transcription start site region 37204	1431 bp downstream
Tssr37205	transcription start site region 37205	1401 bp downstream
Tssr37206	transcription start site region 37206	1237 bp downstream
Tssr37207	transcription start site region 37207	457 bp downstream
Tssr37208	transcription start site region 37208	428 bp downstream
Tssr37209	transcription start site region 37209	406 bp upstream
Tssr37210	transcription start site region 37210	1257 bp upstream
Tssr37211	transcription start site region 37211	1734 bp upstream
Tssr37212	transcription start site region 37212	1757 bp upstream
Tssr37213	transcription start site region 37213	1847 bp upstream
Tssr37214	transcription start site region 37214	1859 bp upstream
Tssr37215	transcription start site region 37215	1910 bp upstream
Tssr41635	transcription start site region 41635	457 bp upstream
Tssr41636	transcription start site region 41636	413 bp upstream