rs256441106 SNP Detail

Summary

• ID
  rs256441106
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19060588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATGAAGA ACAAAGAAGA
  AGAAGAGAGG AGTCCAGGCC ATAATGCAGG TACTACTGAT CTCTGCTGAG ACAGACAGGT
  TGTAGTTCTC TCTTATCCTT CAAAATTCTC AGAGAAATGA GAGGGCCCTT CATGCAAATT
  TTATTGGCCA AACAAATCTT GTTTCAGGTG TGTGTGCTAT CAAATGTCTG GGTGTTATTT
  M
  TGGCCTGAGG TTTCCCAAGG GACAAGAGTG TGCCCAGCTG CTGAACATGC TCAATCCTGA
  GCAGTCACAA AGAGATAGAG ATATTTGTGT TCTAATCTGA GATTCTTCAG TGTTACCAAT
  AGATCCCTTC TGGCAGGCTT AATTGTATTG TGTTTGTATT CACAAGACTT TCCTCAAGAA
  ATTGGCCACT AAACACTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395552144	MGP_WTSI_16_19241931	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256441106					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552144	MGP_WTSI_16_19241931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19060588 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	1687 bp upstream
Gm35545	predicted gene, 35545	504 bp downstream
Gm56600	predicted gene, 56600	within coordinates
Iglv3	immunoglobulin lambda variable 3	159 bp upstream
Rr512770	regulatory region 512770	within coordinates
Tssr137404	transcription start site region 137404	579 bp downstream
Tssr137405	transcription start site region 137405	554 bp downstream
Tssr140323	transcription start site region 140323	730 bp upstream
Tssr140324	transcription start site region 140324	128 bp upstream
Tssr140325	transcription start site region 140325	102 bp upstream
Tssr140326	transcription start site region 140326	24 bp upstream