rs256443182 SNP Detail

Summary

• ID
  rs256443182
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCTATC ATGATCACTT
  CAGTTTCATC CTAGAGATGG AGGGATGTCA CAATATATAC AAGTCAAGGA GTGTAATGAA
  CCATGCAAAT AAACCCAAGG ACAGAAACCA CATGGTCTTT GTGATTTCTT TGTGTGCCCT
  TTGATGGAAT TCAGAATCTT TTAATATGAA GCTCCTAGAG ATTCTAGGGA TACAGAAGAG
  W
  TAGCACAATA TAATAAAGGT AACATAAAAC AACCCAAATT CCAGCATGAA TGGCATGGAG
  CTCATGAAAT TCCATCCTCA GCTGAGGATG GTCAATTGGC TATTGTTGCC TGCTGGAGCA
  GGTGGAGTGT GGGATGTGGT TGCCGAGAGG CTATGGTCCA GTAGAAAGCC TTATACTCAA
  GTGCATTCAG GAAGCACTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922362	MGP_WTSI_6_123232218	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256443182					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922362	MGP_WTSI_6_123232218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259159 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	mRNA-UTR
Tssr58808	transcription start site region 58808	530 bp upstream
Tssr58809	transcription start site region 58809	1192 bp upstream
Tssr58810	transcription start site region 58810	1218 bp upstream
Tssr58811	transcription start site region 58811	1254 bp upstream
Tssr63019	transcription start site region 63019	628 bp upstream
Tssr63020	transcription start site region 63020	293 bp downstream
Tssr63021	transcription start site region 63021	379 bp downstream
Tssr63022	transcription start site region 63022	414 bp downstream
Tssr63023	transcription start site region 63023	442 bp downstream
Tssr63024	transcription start site region 63024	545 bp downstream
Tssr63025	transcription start site region 63025	598 bp downstream
Tssr63026	transcription start site region 63026	609 bp downstream
Tssr63027	transcription start site region 63027	658 bp downstream
Tssr63028	transcription start site region 63028	671 bp downstream
Tssr63029	transcription start site region 63029	702 bp downstream
Tssr63030	transcription start site region 63030	732 bp downstream
Tssr63031	transcription start site region 63031	789 bp downstream
Tssr63032	transcription start site region 63032	813 bp downstream
Tssr63033	transcription start site region 63033	838 bp downstream
Tssr63034	transcription start site region 63034	857 bp downstream
Tssr63035	transcription start site region 63035	878 bp downstream
Tssr63036	transcription start site region 63036	932 bp downstream
Tssr63037	transcription start site region 63037	962 bp downstream
Tssr63038	transcription start site region 63038	999 bp downstream
Tssr63039	transcription start site region 63039	1058 bp downstream
Tssr63040	transcription start site region 63040	1116 bp downstream
Tssr63041	transcription start site region 63041	1165 bp downstream
Tssr63042	transcription start site region 63042	1190 bp downstream
Tssr63043	transcription start site region 63043	1200 bp downstream
Tssr63044	transcription start site region 63044	1222 bp downstream
Tssr63045	transcription start site region 63045	1313 bp downstream
Tssr63046	transcription start site region 63046	1332 bp downstream
Tssr63047	transcription start site region 63047	1355 bp downstream
Tssr63048	transcription start site region 63048	1383 bp downstream
Tssr63049	transcription start site region 63049	1398 bp downstream
Tssr63050	transcription start site region 63050	1422 bp downstream
Tssr63051	transcription start site region 63051	1474 bp downstream