rs256465426 SNP Detail

Summary

• ID
  rs256465426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115222135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAATGAA ATACAGTCTG
  GGTTTTTAAA CAGGACACCA ACAGCCCAAG TTTTGTTTGT CTATTTGTTT GTTTGTTTCT
  TTTTTGCAAG CCCTGGGATT TCGTATTTAA CAGGAAATCG ACTTAGATTA TTAAGGAAAA
  GAAGTACTCA AACATCTGGA GGAATACTGT TACTTTTATT ACGTCCTGAC TTTAGAGTTC
  K
  TAAAGTTTTC CTCTGTAATT CTTACTGTTC TTGTGATTTT TTTTTTCTTA AATTTGTAGT
  TATTCATCCC CGTTGCTGCC CTTTGTTTTC TGTGTTTGTG TGTGTGTGTG CACGCGCGTG
  TGCAGATCCT TTATTTTTAC CAGTTTTACA ATTCAGCTCT TTTAAATTCA TAAGTAGTTT
  GGAAAGCTAT ATGCATTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484732	CHEV_10_114823286	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256465426					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115222135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	223 bp distal
Rr402239	regulatory region 402239	1201 bp downstream
Rr439213	regulatory region 439213	1831 bp distal
Rr439214	regulatory region 439214	1916 bp distal
Rr439215	regulatory region 439215	1261 bp distal
Rr439216	regulatory region 439216	1250 bp distal
Rr439217	regulatory region 439217	987 bp distal
Thap2	THAP domain containing, apoptosis associated protein 2	1795 bp upstream
Tssr95814	transcription start site region 95814	1281 bp downstream
Tssr95815	transcription start site region 95815	1209 bp downstream
Tssr95816	transcription start site region 95816	1173 bp downstream
Tssr99330	transcription start site region 99330	1894 bp upstream
Tssr99331	transcription start site region 99331	1855 bp upstream
Tssr99332	transcription start site region 99332	1795 bp upstream
Tssr99333	transcription start site region 99333	1721 bp upstream
Tssr99334	transcription start site region 99334	1668 bp upstream
Tssr99335	transcription start site region 99335	1434 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates